Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2420 ATGTCGGTGAAAGAGTGTGAGCACCACAAGGGGTGTCGACGGAAAATATTCCGAAGAATCTTTGTGGGGATACTTATATTCCTGTTCATAGTTCTGTTGACGATTCTCATCATCTGGGCGGTCTTGAGGCCTTCCAAGCCATCCTTCATCCTGCAGGACGTCACCGTGTACGCCTTCAATGCCAGCGTGCCCAACTTCCTGACCACAAATTTCCAAGTGACCATCTTGTCCCGCAACCCCAACGCAAGGATCGGAGTCTACTACGACCGTCTCGACGCCTACGTCGACTATCGCAACCAGCAAATCACCTACCGCACCGCCATCCCTCCCTCGTATCAGGGTCACAAGGAGGTCTACGTCTGGTCACCCTTCGTCTACGGCACCAACGTCCCCGTCGCTCCCTACAACTTCGTCGGACTGAGTCAGGACCAGTCCAACGGCAACGTTCTGGTCACCATCAAGATCGATGGACGGGTCAGATGGAAGGTCGGGGCCTTCATTTCGGGCCGTTATCATATTTACGTCAGATGCCCCGCTTATATCAGCTGGGGATCCCGGAGCTCTGCATCCGCCGTGGAAGGTAACGCCGTTAAGTATCAATTGGTCCAGCGATGCTCCGTCAGCGTCTAA 630 0.5429 MSVKECEHHKGCRRKIFRRIFVGILIFLFIVLLTILIIWAVLRPSKPSFILQDVTVYAFNASVPNFLTTNFQVTILSRNPNARIGVYYDRLDAYVDYRNQQITYRTAIPPSYQGHKEVYVWSPFVYGTNVPVAPYNFVGLSQDQSNGNVLVTIKIDGRVRWKVGAFISGRYHIYVRCPAYISWGSRSSASAVEGNAVKYQLVQRCSVSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2420 209 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Alju03g2420 209 PANTHER OS05G0367900 PROTEIN 18 198 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2420 Alju-ChrAlju03 50824505 50825134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2420 9 193 EF-hand Containing Proteins AT5G21130 20.000 6.85e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1298 01 10196404 10197033 Alju03g2420 03 50824505 50825134 CCT
Alju03g2420 03 50824505 50825134 Alju03g2420 03 50824505 50825134 ECH