Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2267 ATGGCCAACCACGAAAAGAATATCTTACAGTTTTTCGTCATTATAGTATCTTTAGTTGCTTGTTATTGTACTTTGCAAGAGGACCCACATATTCTTCTTCATTCTGATGATTCACCTAATACGATTGATGATGGTGGGACATTCGAGAACTTGATCAAACCAAGCTCAGATGATCATTTGAGGTTGAAGATACTGGATAAGTTGGTTGGCCCTTCTCTTTCGCTTAACACGGTTAATGTCAATGATTACGGAGCTGAAGGGGATGGTATTACTGACGACACAAAGGCATTCAAGAAGGCTTGGAAAGTTGCATGCTCTTCTTCTGGGGAATCAGTTTCTCTTGTGGTGCCTAAGCAGAATTACCTACTGAAGCCGATAAGATTCTCAGGGCCATGCAAATCTGACAATATCACAGTGCAGATATGTGGAGTGCTTGAAGCGTCTGATAATCCTTCAGACTACAAATACGATCCCACACACTGGCTTGAGTTTAAGAATGTGCAGAGTCTATCAGTTAACGGTGATGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAGCAAGAAACTTCCCTGCAAGAATGCCCCTACGGCTCTGACGTTCTATAACTGCAAGAACTTGGAGGTTGAGAACTTGACGATAAAAGATGCACAACAAATTCACTTATCATTTCAGAACTCCATCTACGTTAGAGCTTCGGGTCTCACTGTGACTGCACCACAGGATAGTCCTAACACCGACGGAATTCATGTCACTAATACACAAAACATCCAAATCTCAAGCTCTGTTATAGCAACTGGAGATGACTGTCTATCAATTGTAAGTGGATCCCAGAATGTAAAAGCCACAGATATAACATGCGGACCAGGCCATGGCATCAGCATTGGAAGCTTAGGGACCAAACAAGCCGAAGCTTTTGTTTCTGACATAACAGTAAACAGAGTCAAGCTATCTGGAACTAGAAATGGAGTAAGAATTAAGACATGGCAGGGTGGGTTGGGAAGTGCAAGCAACATCAAGTTCCAGAACATAGAAATGAGCAATGTGATCAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAGGATCCATGCAAACAACAGTACTCAGCGGTTCAGATCAAGAATGTGTTATACCAGAACATAAAAGGCACGAGTGCTTCAGAAGTAAGCGTGAGGTTTGATTGCAGCGAGAACTTTCCATGCCAAGAGATTGTGATGCAGAACGTAGACTTGACACTTGAAACAGGGGAAGCTTCCAGAGCTTCATGTGACAGTGTTCAAGTGTCCTACGTTGGACATGTAACTCCTCGCTGCCCATAG 1344 0.4278 MANHEKNILQFFVIIVSLVACYCTLQEDPHILLHSDDSPNTIDDGGTFENLIKPSSDDHLRLKILDKLVGPSLSLNTVNVNDYGAEGDGITDDTKAFKKAWKVACSSSGESVSLVVPKQNYLLKPIRFSGPCKSDNITVQICGVLEASDNPSDYKYDPTHWLEFKNVQSLSVNGDGTINGNGNIWWQNSCKRSKKLPCKNAPTALTFYNCKNLEVENLTIKDAQQIHLSFQNSIYVRASGLTVTAPQDSPNTDGIHVTNTQNIQISSSVIATGDDCLSIVSGSQNVKATDITCGPGHGISIGSLGTKQAEAFVSDITVNRVKLSGTRNGVRIKTWQGGLGSASNIKFQNIEMSNVINPIIIDQNYCDQKDPCKQQYSAVQIKNVLYQNIKGTSASEVSVRFDCSENFPCQEIVMQNVDLTLETGEASRASCDSVQVSYVGHVTPRCP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2267 447 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Alju03g2267 447 SUPERFAMILY Pectin lyase-like 73 446 IPR011050 -
Alju03g2267 447 Pfam Glycosyl hydrolases family 28 108 436 IPR000743 GO:0004650|GO:0005975
Alju03g2267 447 PANTHER - 76 431 - -
Alju03g2267 447 SMART pbh1 342 363 IPR006626 -
Alju03g2267 447 SMART pbh1 260 303 IPR006626 -
Alju03g2267 447 SMART pbh1 313 334 IPR006626 -
Alju03g2267 447 SMART pbh1 210 259 IPR006626 -
Alju03g2267 447 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Alju03g2267 447 FunFam Polygalacturonase QRT2 67 447 - -
Alju03g2267 447 Gene3D - 71 444 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2267 Alju-ChrAlju03 49598163 49600557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2267 70 446 Glycoside Hydrolase AT3G07970 56.728 1.49e-149 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2267 03 49598163 49600557 Alju01g1118 01 8616437 8618850 CCT
Alju03g2267 03 49598163 49600557 Alju03g2267 03 49598163 49600557 ECH