Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1118 ATGATAATGGCCCTACAAAAACATGTTCTTTCATTGTTCTTAATGTTGTTCATCATCATTATTCCTTATGTCCCTTGTTATGGTACCTCTCAAGAGGACCCACTAAAGATACACGGTGGTGATGATTCGCCTTTCAACAACATCAATGATGGTGGGACACCCAAGAACTTGATCCAGCAAAGCACACAAGTATTGAGCTTAAATAGGTTTGTTAAGTTGGGTGTCACGTCTTCTTCAGCTTCCAAGCTTAATGTCAATGACTTTGGAGCTAAAGGGGATGGTAAAACTGATGACACAGAGGCTTTCAATAAGGCCTGGCAAGCTGCGTGTTCTTCTGGAAGAGACGTAATTCTGTTGGTGCCTTCTAATTATAACTATCTTCTCAAGCCTGTCAGATTCTCAGGTCCCTGCAATTCTAGAATTACTTTCCAGATTTCTGGGACAATTGAAGCATCAGAGAACTCATCGGATTACACCGAAGACCCACAACACTGGCTCATGTTCGAGAGTGTTCAGAATGTAACAGTTCAAGGTGGTGGAACCATCAATGGAAATGGAGACACATGGTGGCAAAACTCCTGCAAAAAGAACCCAAGTCTTCCTTGCAAGAGCGCCCCCACGGCTGTGACTTTCTATGAGTGTGAGAATCTGATAGTGGAGAACTTGGTGATTAAAAATGCACAACAAATCCATGTGAACATTCAAGAATCCACAAACGTTAAGGTTTCTGGTGTCACAGTGAGTGCACCAGAGGATAGCCCCAACACTGATGGAATTCATATCACCAATACCAAAATTATCCAAATCTCAAACTCCGTTATAGCCACAGGAGATGATTGTTTGTCCATAGAGAGTGGAACCCAAAATTTACAAGCCACAGACATAACTTGCGGACCCGGCCATGGTATCAGTATCGGAAGCTTAGGGGAGACCGGAACAGAAGAGCTTGTGTCAGGAATAACAGTGAATGGAGCTAATCTTTCTGGAACTACAAATGGAGTTAGAATAAAGACTTGGCCTGGAGGGTCAGGAAGTGCAAGCAATATCAAGTTTCAAAATATTGCCATGGAAAATGTGACAAACCCCATAATAATAGATCAGAACTACTGTGACCAGAAGACTCCATGCGAACAAGAGAAGTCAACGGTGAAGATCAGGAATGTGGTGTACGAGAACATAAAGGGAACGAGTGCTTCAGATGTTGCCGTGAGCTTGAATTGCAGCCAAAGCTTTCCATGTCAGGGAATTGTGTTGCACAACATAGACCTCCGACATGAACAAGAAGGACAAATTCCTAAAGCTTTATGTCAAAGTGCTCTCTTGTCCTACGTTGGATCCGTTTCCCCGCGTTGCCCATAG 1359 0.4327 MIMALQKHVLSLFLMLFIIIIPYVPCYGTSQEDPLKIHGGDDSPFNNINDGGTPKNLIQQSTQVLSLNRFVKLGVTSSSASKLNVNDFGAKGDGKTDDTEAFNKAWQAACSSGRDVILLVPSNYNYLLKPVRFSGPCNSRITFQISGTIEASENSSDYTEDPQHWLMFESVQNVTVQGGGTINGNGDTWWQNSCKKNPSLPCKSAPTAVTFYECENLIVENLVIKNAQQIHVNIQESTNVKVSGVTVSAPEDSPNTDGIHITNTKIIQISNSVIATGDDCLSIESGTQNLQATDITCGPGHGISIGSLGETGTEELVSGITVNGANLSGTTNGVRIKTWPGGSGSASNIKFQNIAMENVTNPIIIDQNYCDQKTPCEQEKSTVKIRNVVYENIKGTSASDVAVSLNCSQSFPCQGIVLHNIDLRHEQEGQIPKALCQSALLSYVGSVSPRCP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1118 452 Gene3D - 72 447 IPR012334 -
Alju01g1118 452 FunFam Polygalacturonase QRT2 69 452 - -
Alju01g1118 452 Pfam Glycosyl hydrolases family 28 110 425 IPR000743 GO:0004650|GO:0005975
Alju01g1118 452 SMART pbh1 264 285 IPR006626 -
Alju01g1118 452 SMART pbh1 346 367 IPR006626 -
Alju01g1118 452 SMART pbh1 237 263 IPR006626 -
Alju01g1118 452 SMART pbh1 317 338 IPR006626 -
Alju01g1118 452 PANTHER - 83 436 - -
Alju01g1118 452 SUPERFAMILY Pectin lyase-like 81 451 IPR011050 -
Alju01g1118 452 ProSitePatterns Polygalacturonase active site. 294 307 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1118 Alju-ChrAlju01 8616437 8618850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1118 47 451 Glycoside Hydrolase AT3G57510 56.311 8.58e-159 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2267 03 49598163 49600557 Alju01g1118 01 8616437 8618850 CCT
Alju01g1118 01 8616437 8618850 Alju01g1118 01 8616437 8618850 ECH