Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1606 ATGGAGTCTCTGTATAAATTGCACCACTGCGCTCAACCATTGCACATATCTACCAGTCACCACCATTCGTCCTTTCCAACCTCCTTTTCTTCCGTCTCCTTCAGGGCGCCACCACCGCCGGCTCCGCCACTCCAATCTCCTTCCTCATCCTTACGGTTATCACCTATTAAAGCCTCTTCCTCATCCACCGATCCCTCATTTCATAATCCCGGACCCATTCTGACCCGTCTGCTCCAAACCCTAAATCCCCTTTTGTCGCCTGCTGTTGAAACTGCTTGCATCGTCGTCGCCGCGTCTGCATTTTTCTTCATGCGTTTTCAGCACATGCCTGTTATTGCAGCTCCGTTTGCGTCCCCCACGGTGGAGTCCGCCCAAGATTCGACGGATAAGCTTTCCTTTGAAGAAAAGGAGAGAACTATTGAAGAGCAATTGATGGATAACCCCAATAACGTCCAAGCTCTTCGGTCTCTCATGGAGCTTAAAATCAGAGCAAATAAAATTGAAGAGGCTATTCAGGCCATTGACCGTTTGATTGAGCTTGAACCCCAGGACTCCGAGTGGCCGCTTATGAAAGCTCATATCTATATCTTTAATGGTGACTACCAATTGGCCAAAAGCATTTTCGAAGACATTCTGAATAAAGACCCATATCGTTTTGAAGCTTATCATGGTCTTGCAATGGCTACTTCGGAATTAAATGAGCCATTGAACGATTTGGTGAAGAGGGTTGAAAAAGCAGTGGAGTTTTGCAAAAAGGAAAAGAGGCACTCAGATGTCAGAGAATTGAAGCTACTACTCGCGCAGATTAAAGTCATGGAGGGATCCTATACTGATGCGCTGAAGGCCTATCAGGCACTTGTCAAGGAAGAACCAAGAGATTTCAGACCGTACTTATGTCAGGGTATCATATATACCCTGCTAAGAAAGAAGGATGAAGCGGAGAAACAATTTGAAAAGTTCCGGAGGCTCGTCCCAAAGAATCACCCTTATAAGGAGTATTTTGAGGATAATATGTTCGCAACTAAGTTTTTCGCTCAGAAGTTTGAGAGGGAGGGAGCAGGAACAAAGAGCTGA 1074 0.4581 MESLYKLHHCAQPLHISTSHHHSSFPTSFSSVSFRAPPPPAPPLQSPSSSLRLSPIKASSSSTDPSFHNPGPILTRLLQTLNPLLSPAVETACIVVAASAFFFMRFQHMPVIAAPFASPTVESAQDSTDKLSFEEKERTIEEQLMDNPNNVQALRSLMELKIRANKIEEAIQAIDRLIELEPQDSEWPLMKAHIYIFNGDYQLAKSIFEDILNKDPYRFEAYHGLAMATSELNEPLNDLVKRVEKAVEFCKKEKRHSDVRELKLLLAQIKVMEGSYTDALKAYQALVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPKNHPYKEYFEDNMFATKFFAQKFEREGAGTKS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1606 357 Gene3D Tetratricopeptide repeat domain 254 337 IPR011990 GO:0005515
Alju01g1606 357 SUPERFAMILY TPR-like 160 322 IPR011990 GO:0005515
Alju01g1606 357 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 130 234 - -
Alju01g1606 357 MobiDBLite consensus disorder prediction 47 68 - -
Alju01g1606 357 MobiDBLite consensus disorder prediction 33 68 - -
Alju01g1606 357 Pfam Tetratricopeptide repeat 143 192 - -
Alju01g1606 357 Pfam Tetratricopeptide repeat 265 326 - -
Alju01g1606 357 Coils Coil 157 177 - -
Alju01g1606 357 Gene3D Tetratricopeptide repeat domain 120 253 IPR011990 GO:0005515
Alju01g1606 357 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Alju01g1606 357 SMART tpr_5 185 218 IPR019734 GO:0005515
Alju01g1606 357 SMART tpr_5 260 293 IPR019734 GO:0005515
Alju01g1606 357 SMART tpr_5 151 184 IPR019734 GO:0005515
Alju01g1606 357 SMART tpr_5 294 327 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1606 Alju-ChrAlju01 12896395 12897468 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1606 01 12896395 12897468 Alju03g2705 03 52986943 52988016 CCT