Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1499 ATGGAAGCTGCAAAGAATTTGTTTAGTCCATCCCCTTTTCCATCCAGAACTAATCACTGGAGCGGTCTTCCCTCGTCTTCTTCATCTTCTTCTTTAGTTTTCACATTTCATGAACAAGCCACTCCCGCAGTTACCTCTAGGTCTGCTAGTTTTGCTTCTCAGCATTTTCCCACCTCGGTTATTCTACAAGAACAACGTGATGAATGCAGACCTATACTGCGCATGCATAAGGAAGAAAAGACATCCCAGGCAACATTGAATACAAGGCAGATGGATATGGCCTCAGTTCGTGAAGACCATAACCCTGACAACGCTGATCAACTAGTGCTTGACTTTAAGCAGCAATTGCAAATTTGGCCTTGTTTATGGAACTTGTTGACACCAGCAGGTGAGATTGCAGCATCATCAACTCTGCAGCCTATTGCCATTGACTCAGAGAATACTGCAGAAGTTGAAGAGCATGATGCAGTTGCTCTTGCTAAGCAAGCATTGTCAGCCTCTAAACAAGCTGCCTCGATAGCAGCAGCTTTGGAATCAATCAAAGCTGATGATGATGATTTACCTCCTCTAGGTTTGGCCTCCACAAGTTTGGATGACATTTCACTTGGGAAGAATAGAACTGTGAGATCAACACGGCTTCTAGAGAGACAATCAAAGAAGAGAAAAAAATCAAAGGCAAAAGTCTTAGATGAAGAAAACTATCTTTCTAAAAAGGCTGAAGTAAAAGGAAGGTTAAATATAGAAAAGAAGATAAACGAAGGGTTTGATCAAAATGATCCCCTGCGCTTGTTCTTATGGGGTCCTGAAACAAAGCAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTCAGATTGGAAGGAGTAAAGAGAAGACTTCAATCACAATTTGGGCGGGAACCAACTTTGGCTGAGTGGGCTGGTGGTGTGGGCCTCACCTGTCAAGCCCTGCAGTTACAGCTTTATTCTGGTAACAGCAGCCGAGAGAAGCTGATTTATGCAAATTTACGAATGGTAGTTCACATTGCTAAACATTATCGGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCCCAAGCAGATTGTCGCTTCGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCTAGGACAATTCGTCTGCCGGAGAATGCATATACCCTCTTGGGCAAGGTATTAGAGACAAAGAAATTGTATATTCGAGAAGGAAATCTTCATCCCACCAAAGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGAGAAGTTAGAAAAGTTGCTATATGTTGCAAGAATTCCAATTTCAATGCAACAAACAGTATGGTCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACGGCGATTGAGGTCCCAGATTTGAGTGTTGCAAAACAGATGATGAGGAAGCATGCGCGAAACCTGTTAAGTGTCTTGAACCCAAAAGAAAGGAGGATAATCCGTCTAAGATTTGGCATCGAGGATGGAGGACAGAAATCATTATCGGAGATTGGAAACAAATTTGGTCTATCTAAGGAAAGGGTTCGACAGTTAGAGAGCCGAGCATTGTACAAGCTGAAGCAGTGCCTTGGCAGCCATGGACTTGATGCATATGCAGAATTGCTTGTGTAG 1722 0.4268 MEAAKNLFSPSPFPSRTNHWSGLPSSSSSSSLVFTFHEQATPAVTSRSASFASQHFPTSVILQEQRDECRPILRMHKEEKTSQATLNTRQMDMASVREDHNPDNADQLVLDFKQQLQIWPCLWNLLTPAGEIAASSTLQPIAIDSENTAEVEEHDAVALAKQALSASKQAASIAAALESIKADDDDLPPLGLASTSLDDISLGKNRTVRSTRLLERQSKKRKKSKAKVLDEENYLSKKAEVKGRLNIEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLFRLEGVKRRLQSQFGREPTLAEWAGGVGLTCQALQLQLYSGNSSREKLIYANLRMVVHIAKHYRGRGLSFQDLLQEGSMGLMKSVEKFKPQADCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENAYTLLGKVLETKKLYIREGNLHPTKEELARRVGITVEKLEKLLYVARIPISMQQTVWSDQDTTFQEVTADTAIEVPDLSVAKQMMRKHARNLLSVLNPKERRIIRLRFGIEDGGQKSLSEIGNKFGLSKERVRQLESRALYKLKQCLGSHGLDAYAELLV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1499 573 Pfam Sigma-70, region 4 505 558 IPR007630 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 MobiDBLite consensus disorder prediction 1 22 - -
Alju01g1499 573 PRINTS Major sigma-70 factor signature 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 PRINTS Major sigma-70 factor signature 530 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 PRINTS Major sigma-70 factor signature 385 393 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 PRINTS Major sigma-70 factor signature 509 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 PRINTS Major sigma-70 factor signature 545 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 469 568 IPR013324 -
Alju01g1499 573 ProSitePatterns Sigma-70 factors family signature 1. 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 Gene3D - 410 487 IPR036388 -
Alju01g1499 573 NCBIfam sigma-70 family RNA polymerase sigma factor 333 560 IPR014284 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 Pfam Sigma-70 region 3 418 490 IPR007624 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 Gene3D - 124 406 - -
Alju01g1499 573 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 151 569 - -
Alju01g1499 573 Pfam Sigma-70 region 2 338 406 IPR007627 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 258 407 IPR013325 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 ProSitePatterns Sigma-70 factors family signature 2. 530 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Alju01g1499 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 410 483 IPR013324 -
Alju01g1499 573 Gene3D - 492 572 IPR036388 -
Alju01g1499 573 CDD Sigma70_r4 499 557 - -
Alju01g1499 573 PIRSF Sigma_factor_SigC 1 573 IPR016262 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1499 Alju-ChrAlju01 11999608 12003685 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2597 03 52288946 52305161 Alju01g1499 01 11999608 12003685 CCT
Alju01g1499 01 11999608 12003685 Alju01g1499 01 11999608 12003685 ECH