Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00097 ATGAGTTATTATCTTATGCTAACCCTAATATCATCATTAGCTTTCACATTGCTAATTGGAACCACCATAGCTGAACAATGTGGAAAACAAGCAAATGGATCATTGTGCCCTAACAACCTATGTTGTAGCAAATTTGGTTATTGTGGTAACACAAATGACTATTGCGGTGACGGTTGCCAAAGCCAATGCAAAGGTTCAACACCAAAAACACCACCTAGTTCCGGCGGTGGTTCCGGTGGTGGTGATGTTGGTAGGATCATAACTTCTTCTATCTTTGATCAAATGCTTAAGTACCGGAACGATCCGCGGTGTAAGGGAAACGGATTCTATTCCTATAATGCTTTCATCGCCGCCGCTCGCTCTTTCCGCGGCTTTGGTACCACCGGTGATGATGCCACCAAGAAGAAGGAGCTTGCTGCCTTTTTGGCTCAAACTTCCCATGAAACCACAGGAGGATGGGCAAGTGCACCAGATGGACCATATGCATGGGGATATTGCTTTATCAATGAAAATACCCAGGCAGATTATTGTACCCCTTCCCAACAATGGCCATGTGCTTCTGGCAAAAAATACTATGGCAGAGGACCAATTCAACTTACTCACAACTATAATTATGGGCCAGCGGGTAAGGCTATAGGACAAGATCTTCTAAACAACCCTGATTTAGTGGCTAGAGATGCAACTATTTCATTCAAGACAGCCATATGGTTTTGGATGACAGCACAAGGAAACAAGCCATCAAGCCATGATGTCATCACCGGAAGATGGACACCATCGGCCGCGGACAAGCGGAATTGA 798 0.4486 MSYYLMLTLISSLAFTLLIGTTIAEQCGKQANGSLCPNNLCCSKFGYCGNTNDYCGDGCQSQCKGSTPKTPPSSGGGSGGGDVGRIITSSIFDQMLKYRNDPRCKGNGFYSYNAFIAAARSFRGFGTTGDDATKKKELAAFLAQTSHETTGGWASAPDGPYAWGYCFINENTQADYCTPSQQWPCASGKKYYGRGPIQLTHNYNYGPAGKAIGQDLLNNPDLVARDATISFKTAIWFWMTAQGNKPSSHDVITGRWTPSAADKRN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00097 265 SUPERFAMILY Plant lectins/antimicrobial peptides 26 69 IPR036861 GO:0008061
Aip10g00097 265 Pfam Chitin recognition protein 26 63 IPR001002 GO:0008061
Aip10g00097 265 ProSitePatterns Chitinases family 19 signature 2. 229 239 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip10g00097 265 PIRSF Endochitinase 2 263 IPR016283 GO:0004568|GO:0005975
Aip10g00097 265 Gene3D - 197 265 - -
Aip10g00097 265 CDD ChtBD1_GH19_hevein 25 64 - -
Aip10g00097 265 PANTHER CHITINASE (CLASS IB) / HEVEIN 9 263 - -
Aip10g00097 265 PANTHER CHITINASE-RELATED 9 263 - -
Aip10g00097 265 Gene3D - 24 64 IPR036861 GO:0008061
Aip10g00097 265 SUPERFAMILY Lysozyme-like 82 263 IPR023346 -
Aip10g00097 265 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Aip10g00097 265 SMART ChitinBD_3 26 63 IPR001002 GO:0008061
Aip10g00097 265 CDD chitinase_GH19 87 255 - -
Aip10g00097 265 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Aip10g00097 265 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Aip10g00097 265 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Aip10g00097 265 ProSiteProfiles Chitin-binding type-1 domain profile. 24 65 IPR001002 GO:0008061
Aip10g00097 265 Pfam Chitinase class I 86 263 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip10g00097 265 Gene3D - 65 194 - -
Aip10g00097 265 ProSitePatterns Chitinases family 19 signature 1. 104 126 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00097 Aip-Chr10 889393 893648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00097 24 263 Glycoside Hydrolase AT3G12500 66.529 2.59e-111 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00097 K20547 - gmx:547572 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00097 10 889393 893648 Aip10g00097 10 889393 893648 ECH
Aip05g00331 05 3726082 3727874 Aip10g00097 10 889393 893648 PCT