Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00090 ATGACAACCGCAAGATCCATCATCCCACTCCTCAACCGCCTCATCTCCAGATCTCAACCGTCCAGATCCGTAACCTACATGCACCGTCCCGGCGATGGCGCCCCTCGCCCGGTAACCCTCATACCTGGCGACGGCGTCGGGCCTCTGGTCACCAACGCCGTGGAACAGGTCATGGAGGCCATGCACGCTCCGGTGTACTTCGAGAAATTCGAAGTGCACGGAACCATGAAGAAGTTTCCAGAAGAGGTTCTGGATTCGATTCGAAAGAACAAGGTGTGCATCAAGGGAGGTCTGGCCACGCCGATGGGCGGTGGCGTGAACTCCCTGAACGTGTATCTAAGGAAGGAGCTTGATCTGTACGCTTCGTTGGTGAATTGCTTCAATATGAGAGGATTGCCGACGAGGCATGAAAATGTGGACATTGTTGTGATTAGAGAGAACACTGAAGGTGAATACGCTGGCCTTGAGCATGAGGTTGTGCCTGGTGTTGTTGAAAGTCTTAAGGTGATAACGAAGTTCTGTTCGGAGAGAATAGCATCATATGCATTCGAGTATGCGTATCTGAACAACAGAAAGAAGGTGACAGCGGTGCACAAAGCAAACATAATGAAGCTAGCAGATGGTCTGTTCTTGGAAGCATGCAGAGAGGTTGCACAAAAGTATCCTGCAATCCAATACAATGAAATCATTGTTGATAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTGACTCCTAATCTTTATGGAAATCTAGTTGCAAATACTGCAGCAGGCATTTGTGGAGGCACAGGAGTCATGCCTGGAGGTAATGTTGGTGCTGAGCATGCTGTGTTTGAGCAAGGAGCTTCAGCTGGAAATGTTGGAAAGGATTCGATTGTTGCACAAAAAACAGCAAACCCAGTTGCACTTCTTCTCTCTTCTGCAATGATGCTTAGGCATCTTCAGTTTCCTGCATTTGCTGACAGATTAGAAACTGCTGTTCAAAAAGTCATTCTTCAAGCCAAAGTCAGAACAAAGGATCTTGGAGGATCAAGTACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCTTTAGATTAA 1098 0.4736 MTTARSIIPLLNRLISRSQPSRSVTYMHRPGDGAPRPVTLIPGDGVGPLVTNAVEQVMEAMHAPVYFEKFEVHGTMKKFPEEVLDSIRKNKVCIKGGLATPMGGGVNSLNVYLRKELDLYASLVNCFNMRGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIASYAFEYAYLNNRKKVTAVHKANIMKLADGLFLEACREVAQKYPAIQYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGICGGTGVMPGGNVGAEHAVFEQGASAGNVGKDSIVAQKTANPVALLLSSAMMLRHLQFPAFADRLETAVQKVILQAKVRTKDLGGSSTTQEVVDAVIDALD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00090 365 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 35 363 IPR004434 GO:0006099
Aip10g00090 365 Gene3D Isopropylmalate Dehydrogenase 19 364 - -
Aip10g00090 365 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 2, MITOCHONDRIAL 20 362 - -
Aip10g00090 365 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 36 364 - -
Aip10g00090 365 Pfam Isocitrate/isopropylmalate dehydrogenase 38 360 IPR024084 -
Aip10g00090 365 SMART Iso_dh_2 37 360 IPR024084 -
Aip10g00090 365 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 20 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00090 Aip-Chr10 842245 845971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00090 K00030 - gmx:100777867 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00327 05 3682230 3686291 Aip10g00090 10 842245 845971 PCT