Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04045 ATGGCTTCTGATCTTCAAGCGAGGGCCAAAGAGGCATTCGTCGATGAAGACTATGATCTCGCGATGGACCTTCTCACTAAGGCCATCGCTTTTGAATCTAACAACGCTCAATACTATGCCGATCGTGCCCAAGCCAACATCAAACTCAACAACCTCGCTGAGGCTGTTGCTGATGCAAACATGGCAATTGAGTTGAATCCTTCTCTCCCAAAAGCATATTTGCGGAAAGGTACTGCATGCATGAAGCTTAAGGAATATCAGACAGCTAAGGCAGCTCTAGAGATGGGTGCTTCATTGGCTCCAGGGGATTCAAAATTCATTGATATGCTCAAACAATGTCATGAGCTCATTGCTGAAAAGCACACGACAACTCGGGGTGTTTCTGCCAAAGAACTTGAGCAAGTGAATGACGTTTCACAGCAGATGACAATAGCAGTTGCTAAACCTAAATACAGGCATGAATTCTACCAAAAACCTGATGAGGTGGTGGTTACCATTTTTGCAAAGGGCATTCCACGGGACAGCGTGACTGTTGATTTTGGTGAACAAATACTAAGTGTTAGAATCGATGTACCTGGTGAGGATGCATATGCTCTTCAACCTCGCTTGTTTGGAAAGATCGTACCTTCCAGATGCCGATATGAAGTTTTGTCTACCAAGATGGAAATCCGGCTTGCAAAAGCAGAACCTATCCACTGGGCAGCTCTTGAATTCCGTGGAGGTGCAACAGTTCCACAGAGGGCTATTGTTTCATCAGTTATCAACGTTCAAAGGCCTACTTACCCTTCCTCTAAACCAAAAAGAGTAGATTGGGATAAGCTGGAAGCTCAAGTTAAGAAAGAGGAAAAAGATGAAAAGCTTGATGGTGACGCAGCGCTGAACAAATTCTTCCGCCAGATATATCAAGATGCAGATGAGGACACCAGAAGAGCAATGAGCAAATCATTTGTGGAGTCTAATGGAACCGTACTGTCCACAAACTGGAAAGAAGTGGGATCCAAGAAGGTTCAGGGAAGTGCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAG 1056 0.446 MASDLQARAKEAFVDEDYDLAMDLLTKAIAFESNNAQYYADRAQANIKLNNLAEAVADANMAIELNPSLPKAYLRKGTACMKLKEYQTAKAALEMGASLAPGDSKFIDMLKQCHELIAEKHTTTRGVSAKELEQVNDVSQQMTIAVAKPKYRHEFYQKPDEVVVTIFAKGIPRDSVTVDFGEQILSVRIDVPGEDAYALQPRLFGKIVPSRCRYEVLSTKMEIRLAKAEPIHWAALEFRGGATVPQRAIVSSVINVQRPTYPSSKPKRVDWDKLEAQVKKEEKDEKLDGDAALNKFFRQIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSKKVQGSAPDGMELKKWEY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04045 351 PANTHER PROTEIN SGT1 HOMOLOG A 1 351 - -
Aip09g04045 351 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Aip09g04045 351 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Aip09g04045 351 CDD p23_CS_SGT1_like 154 237 - -
Aip09g04045 351 Pfam SGS domain 270 349 IPR007699 -
Aip09g04045 351 ProSiteProfiles SGS domain profile. 260 351 IPR007699 -
Aip09g04045 351 Gene3D - 150 238 IPR008978 -
Aip09g04045 351 Pfam CS domain 152 227 IPR007052 -
Aip09g04045 351 PANTHER PROTEIN SGT1 HOMOLOG 1 351 IPR044563 GO:0051087
Aip09g04045 351 SMART tpr_5 70 103 IPR019734 GO:0005515
Aip09g04045 351 SMART tpr_5 36 69 IPR019734 GO:0005515
Aip09g04045 351 SMART tpr_5 2 35 IPR019734 GO:0005515
Aip09g04045 351 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515
Aip09g04045 351 Coils Coil 42 62 - -
Aip09g04045 351 SUPERFAMILY TPR-like 5 116 IPR011990 GO:0005515
Aip09g04045 351 SUPERFAMILY HSP20-like chaperones 147 245 IPR008978 -
Aip09g04045 351 ProSiteProfiles CS domain profile. 148 237 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04045 Aip-Chr9 146736322 146738794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04045 K12795 - gmx:100780174 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03925 05 147417472 147421838 Aip09g04045 09 146736322 146738794 ECH
Aip09g04045 09 146736322 146738794 Aip09g04045 09 146736322 146738794 ECH