Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03925 ATGGCTTCTGATCTGGAAGCGAAAGCCAAAGAGGCGTTTGTGGAAGATCACTTTGAGCTGGCGGTTGAACTTCTCTCTCAGGCCATTGATATCGAACCCACCAGAGCTGAACTTTATGCCGACCGTGCCCAAGCCAACATCAAACTCTCCAACTTCACTGAGGCTGTTGCTGATGCAAACAAGGCAATTGAGTTAAATCCTTCTCTATCAAAGGCATATATGCGTAAAGGCATGGCGTGCATGAAACTTGAGGAATATCAAACTGCTAAGGCTGCTCTAGAGGTCGGTGCTTCATTAGCTCCAGGAGAATCAAGATTTGCTAAGTTAATCAAAGAATGTGATAAGCTTATTGCAGAAGAATCTTATGACACACCAATACAGGAGAAGACCACAACACAGGAAGAATCAGCAAACGAAGTTCAGCCTGAGAATGTTCTTCCAGAGCAGCCTCCAGTTTCAGTGGTTAAATCTAAATATAGGCATGAGTTCTACCAGAAACCTAATGAGGTGGTTGTAACTGTATTTGCAAAGGGCATTCCAAGGGAAAATGTTACTGTTGACTTTGGCGAACAAATACTGAGTGTTAGTATTAATGTTCCTGGAGAAGATCCATATGTTTTTCAACCTCGGTTATTTGGAAAGATCATACCTTCCAGATGCCGATATGAAGTTTTGTCCACAAAAATTGAAATAAGACTCGTAAAAGCAGACCCTATTCACTGGACATCTCTTGAATTCACCAGAGCTACAGTTCCACAAATGGTTGTTGTCCCATCAGCCACAGGAATCAATAGACCAACTTACCCATCCTCAAAACCAACAAGGGTTGATTGGGATAAGCTTGAAGCTCAAGTAAAGAAAGAGGAGAAAGAAGAAAAGCTTGATGGCGATGCAGCTCTAAACAAGTTTTTCCGGGAAATATATCAAGATGCGGACGAGGATACACGAAGAGCAATGAGAAAATCATTTGTGGAGTCTAACGGGACAGTGCTGTCAACAAACTGGAAAGAAGTGGGATCGAAGAAGGTGGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAG 1077 0.4262 MASDLEAKAKEAFVEDHFELAVELLSQAIDIEPTRAELYADRAQANIKLSNFTEAVADANKAIELNPSLSKAYMRKGMACMKLEEYQTAKAALEVGASLAPGESRFAKLIKECDKLIAEESYDTPIQEKTTTQEESANEVQPENVLPEQPPVSVVKSKYRHEFYQKPNEVVVTVFAKGIPRENVTVDFGEQILSVSINVPGEDPYVFQPRLFGKIIPSRCRYEVLSTKIEIRLVKADPIHWTSLEFTRATVPQMVVVPSATGINRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03925 358 Gene3D - 157 247 IPR008978 -
Aip05g03925 358 SUPERFAMILY HSP20-like chaperones 147 250 IPR008978 -
Aip05g03925 358 Pfam CS domain 160 235 IPR007052 -
Aip05g03925 358 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Aip05g03925 358 Pfam Tetratricopeptide repeat 71 100 IPR019734 GO:0005515
Aip05g03925 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Aip05g03925 358 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Aip05g03925 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Aip05g03925 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Aip05g03925 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Aip05g03925 358 Pfam SGS domain 277 356 IPR007699 -
Aip05g03925 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
Aip05g03925 358 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Aip05g03925 358 CDD p23_CS_SGT1_like 162 245 - -
Aip05g03925 358 PANTHER PHOSPHATASE-RELATED 1 358 - -
Aip05g03925 358 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Aip05g03925 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03925 Aip-Chr5 147417472 147421838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03925 K12795 - gmx:100780174 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03925 05 147417472 147421838 Aip09g04045 09 146736322 146738794 ECH
Aip05g03925 05 147417472 147421838 Aip05g03925 05 147417472 147421838 ECH