Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04038 ATGGTGGTTGCAGCGCCATCCATAACATACACCATGAAGCACTCTCCAAATCCTTGCTACGTGATTGGTGTGATATCCGTGGTTGTGATACTGGGATCAGTAACAGAATGCAGAAGATTGAACGGCATTGAATATCCTGCAATCAACTGCAGAAAGCACAGTGCGGTATTGACTGATTTTGGTGGCGTTGGTGATGGAAAAACTTCCAACACAAAGGCATTTCAATATGCAATAAGCAACCTGAGCCACTATGCATCTGATGGTGGTGCACAGCTTCTTGTGCCACCCGGCAAGTGGCTCACTGGAAGCTTTAACCTCACAAGCCATTTCACTCTCTTTCTCCAAAAGGGTGCTCTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTCCACTTTCTGTTCTACCATCTTATGGAAGGGGAAGAGATGCTCCTGATGGAAGATTTAGCAGCCTCATCTTTGGAACTAACCTCACTGATGTTGTGATCACCGGTGCTAATGGCACAATTGACGGGCAAGGGTCATATTGGTGGGCCAAGTTCAAACAGAACCAATTCAAACTGACTAGACCGTACTTGATAGAGATCATGTACTCTGATCAAATCCAGATTTCAAATCTCACTCTGCTCAATTCTCCATCCTGGTTTGTTCATCCGATATACAGCAGTAATATAATAATTCAACGGCTTACGATTGTTGCACCAATTGACTCTCCCAACACAGATGGAATAAACCCAGATTCATGCAGAAACACTAGGATTGAAGACTGCTACATTGTATCGGGAGATGACTGCATTGCAGTGAAGAGTGGGTGGGATGAATACGGAATCAAATTCGGGAAGCCAACGGAACACCTGATCATCAGGAGACTGACATGCATATCCCCCGACAGCGCCATGATTGCATTAGGCAGTGAAATGTCCGGTGGCATCCGAGATGTGAGGGCTGAAGACATCACGGCCATCAACACGCAATCGGCGGTTAGAATCAAGACAGCAATTGGCAGAGGAGGGTATGTTAAGGACATATTTGTCAAGGGAGCTCAATTGCACACCATGAAGTATGTCTTCTGGATCACCGGTTCATATGGGTCGCATCCTGATAATGGTTTTGATCCAAACGCGCTTCCTCAAATCACTGGGATAAACTACAGAGACTTCACTGCTGACAATGTCACATATTCAGCAAGACTAGAAGGCATCTCCAAGGACCCCTTTAGTGGAATATGCATTTCAAATGTCGATATTCGACTCAGTCAAGAGAAGAAGAAGCTTCAATGGAATTGCACGGATGTCTCTGGAGTTACAAAAAATGTCACTCCTCAGCCTTGTGATTTGCTTCCTCTCAAGACACAAGCCCATGACTGTCCTTATCCAACTGACAAACTCCCCATTGATAGACTTCAACTCCATACTTGTTCACTTTAA 1428 0.4496 MVVAAPSITYTMKHSPNPCYVIGVISVVVILGSVTECRRLNGIEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGAQLLVPPGKWLTGSFNLTSHFTLFLQKGALILASQDESEWPPLSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGANGTIDGQGSYWWAKFKQNQFKLTRPYLIEIMYSDQIQISNLTLLNSPSWFVHPIYSSNIIIQRLTIVAPIDSPNTDGINPDSCRNTRIEDCYIVSGDDCIAVKSGWDEYGIKFGKPTEHLIIRRLTCISPDSAMIALGSEMSGGIRDVRAEDITAINTQSAVRIKTAIGRGGYVKDIFVKGAQLHTMKYVFWITGSYGSHPDNGFDPNALPQITGINYRDFTADNVTYSARLEGISKDPFSGICISNVDIRLSQEKKKLQWNCTDVSGVTKNVTPQPCDLLPLKTQAHDCPYPTDKLPIDRLQLHTCSL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04038 475 PANTHER PECTIN LYASE-RELATED 32 474 - -
Aip09g04038 475 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 32 474 - -
Aip09g04038 475 Pfam Glycosyl hydrolases family 28 152 433 IPR000743 GO:0004650|GO:0005975
Aip09g04038 475 Gene3D - 38 442 IPR012334 -
Aip09g04038 475 SUPERFAMILY Pectin lyase-like 50 471 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04038 Aip-Chr9 146700985 146702889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04038 43 475 Glycoside Hydrolase AT3G48950 70.938 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04038 - - ahf:112777338 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04038 09 146700985 146702889 Aip09g04038 09 146700985 146702889 ECH
Aip05g03906 05 147253688 147256201 Aip09g04038 09 146700985 146702889 PCT