Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03906 ATGATGTTTGAGATAAACTCTTGTTTTGCACAGGTTGTTGGGTTTATCTGCACAATTTTGTTGTTGAGATCAGTAGCAGAATGCAGAGAGGTCAATGGTGTATTGGAGAATCTTGAGTACCCTGCAATTAGTTGCAGAAAACACAGTGCAAGTTTGATTGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAATACAAAGGCCTTTCAATATGCAATTGGGAACCTGAGCCATTATGGTTCTGATGGTGGAGCATTGCTTGTTGTGCCACCTGGGAAATGGTTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCACCGTGACACTATCATCCTCGCGTCTCAGGATGAATCAGAATGGCCTGAACTTTCTGTACTACCATCATATGGTAGAGGAAGAGACGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTAGTTACTGGTTATAATGGGACAATTGATGGACAAGGCTCTTATTGGTGGGATAAGTTTCATAAGGGTGAATTGAAACTTACTAGACCATATATGATTGAGATTATGTTCTCTGATCACATTCAGATATCAAATCTCACTTTGATCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGACTCACCATTGCTGCACCAACTGACTCTCCCAACACAGATGGAATAGACCCTGATTCTTGTACCAATACAAGGATTGAAGACTGCAATATTGTCTCTGGTGATGATTGTATTGCAGTTAAGAGTGGTTGGGATGAGTATGGAATAAAATTTGGAATGCCAAGCCAACACATAGTAATTAGAAGGCTTACATGTGTATCCCCTGATAGTGCTATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCCGAAAACCTCACTGCTATCGATACTGAATCGGCCGTTAGGATCAAAACTGCAGTTGGTAGAGGAGGATATGTTAAGGACATATTTGTTAAGGGAATGAACTTGAACAACATGAAATATGTGTTTTGGATAACAGGTTCTTATGGATCACACGCTGACAATGATTTTGATCCAAAAGCACTTCCTGATATTAGTGGCATAAACTATAGAGATGTCATAGCAGATTACTGCAATTATACAGCAAAACTTGAAGGGATTCCTAATGATCCTTTTACAGGAATCTGTATATCTAATATGAGTATCACAAATAGTGACATGAAGAAATTGCAATGGAATTGCACTGATGTTGAAGGTGTTTCAAGCAATGTTAGTCCTGTCCCTTGTGAATTGCTATCACAGAAGGAAGAGAAGAAATTTGATTGTCCTTTTCCAGATGAGAAACTTCCCATTGAAAGTGTTATGTTGAAGACTTGTTCCTTTAAAAGTGTCTAA 1422 0.391 MMFEINSCFAQVVGFICTILLLRSVAECREVNGVLENLEYPAISCRKHSASLIDFGGVGDGKTSNTKAFQYAIGNLSHYGSDGGALLVVPPGKWLTGSFNLTSHFTLFLHRDTIILASQDESEWPELSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVVTGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSSDIIIQGLTIAAPTDSPNTDGIDPDSCTNTRIEDCNIVSGDDCIAVKSGWDEYGIKFGMPSQHIVIRRLTCVSPDSAMIALGSEMSGGIQDVRAENLTAIDTESAVRIKTAVGRGGYVKDIFVKGMNLNNMKYVFWITGSYGSHADNDFDPKALPDISGINYRDVIADYCNYTAKLEGIPNDPFTGICISNMSITNSDMKKLQWNCTDVEGVSSNVSPVPCELLSQKEEKKFDCPFPDEKLPIESVMLKTCSFKSV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03906 473 Pfam Glycosyl hydrolases family 28 146 427 IPR000743 GO:0004650|GO:0005975
Aip05g03906 473 PANTHER PECTIN LYASE-RELATED 17 469 - -
Aip05g03906 473 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 17 469 - -
Aip05g03906 473 SUPERFAMILY Pectin lyase-like 42 443 IPR011050 -
Aip05g03906 473 Gene3D - 30 435 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03906 Aip-Chr5 147253688 147256201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03906 3 471 Glycoside Hydrolase AT3G61490 64.375 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03906 - - gmx:100812836 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03906 05 147253688 147256201 Aip05g03906 05 147253688 147256201 ECH
Aip05g03906 05 147253688 147256201 Aip09g04038 09 146700985 146702889 PCT