Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03988 ATGTGTCAGCAAAGTGAGTACCTTGGTGGCTCAGACAGCAACATGCTGAGGGAAACATTGTTGATCCAAAATGAAACACAAGAAGAAGAAGAAGAAAAGTGTCTAACAAGACATGAGAGTGAAGATGCCATGAGAGAAGTAATCTCCATATCCAAAATAGCATTCCCAATGATTCTCACCGGTCTATTGCTCTACTGCCGCTCCATGATCTCCATGCTCTTCCTCGGCCGCCTGGGCGAACTCGCCTTAGCCGGCGGCTCCCTCGCACTAGGCTTCGCCAACATAACCGGCTACTCTGTCCTCTCCGGCCTGGCCGTGGGCATGGAACCCATTTGCGGACAGGCCTTTGGCGCCAAAAAGTTCACCCTGCTGGGCCTATGCTTACAAAGAACCATTCTCTTGCTTCTCTTCACCTCCATCCCCATAACACTGCTCTGGCTCCACGTGAAGCAAATCCTTCTCTTGTGTAACCAGGATGAGGACATAGCAACGCAAGCGCAGTCATTTCTTGTGTATTCCATCCCTGACCTCATTGCACAGTCTTTTCTACACCCTTTGAGAATTTACCTTAGAACCCAATCCATTACTCTGCCTCTTACCCTCTGCGCCGCCTTCTCTATTCTCCTCCACATACCAATCAACTATCTCCTTGTTTCTCACCTCAATCTTGGAATCAAAGGCGTGGCCTTAAGTGGGGTGTGGACAAATTTCAACCTTGTTGCTTCCTTGATCCTCTACATAGTTTTCTCTGGCACGCACAACAAAACATGGGGGGGTTTCACTTTCGAGTGTTTCACACAGTGGAGAAACCTCTTGAACCTTGCAATTCCAAGCTGCATTTCCGTGTGCCTGGAATGGTGGTGGTATGAGATCATGATCCTTCTCTGCGGTTTGCTGGTGAATCCAAGAGCAACAGTGGCTTCAATGGGAATCCTGATTCAAACGACTTCCCTTCTCTACATTTTCCCATCATCATTGAGCTTCAGTGTGTCAACAAGAGTGGGTAACAAGCTCGGTGAACAACAACCCTCAAAAGCAAAGCTTTCTGCAATTGTGGGCCTCATTTGCAGCATAATGTTGGGACTCACAGCTTTGGTGTTTTCTGTGATGGTTAGGAATATATGGGCCACCATGTTCACAGAGGACCAAGAGATTATAGCATTAACGTCAATGGTGTTACCCATCATAGGCCTTTGTGAACTCGGAAACTGTCCTCAAACAACGGGTTGTGGTGTTCTTAGAGGAACAGCAAGGCCTAAAGTGGGTGCACACATTAACTTGGGTTGCTTCTACCTTGTTGGAATGCCTGTGGCAATTTGGTTAGCTTTCTTTGCATCTTTTGATTTCCAAGGCTTGTGGCTTGGCTTGCTCGCTGCTCAAGCTTCTTGTGCTCTTACAATGTTGCTCGTTTTGTATGCAACTGACTGGGAATTTCAGGCCCAAAGAGCTGAGAAGCTCACAGCAACTGATGCTGTTCTTCTTCATGATGATCCAGAGAACAAACTACCAAACCAAGATTCTTTATTGTCTTAA 1533 0.469 MCQQSEYLGGSDSNMLRETLLIQNETQEEEEEKCLTRHESEDAMREVISISKIAFPMILTGLLLYCRSMISMLFLGRLGELALAGGSLALGFANITGYSVLSGLAVGMEPICGQAFGAKKFTLLGLCLQRTILLLLFTSIPITLLWLHVKQILLLCNQDEDIATQAQSFLVYSIPDLIAQSFLHPLRIYLRTQSITLPLTLCAAFSILLHIPINYLLVSHLNLGIKGVALSGVWTNFNLVASLILYIVFSGTHNKTWGGFTFECFTQWRNLLNLAIPSCISVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGEQQPSKAKLSAIVGLICSIMLGLTALVFSVMVRNIWATMFTEDQEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKVGAHINLGCFYLVGMPVAIWLAFFASFDFQGLWLGLLAAQASCALTMLLVLYATDWEFQAQRAEKLTATDAVLLHDDPENKLPNQDSLLS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03988 510 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
Aip09g03988 510 Pfam MatE 56 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip09g03988 510 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip09g03988 510 TIGRFAM matE: MATE efflux family protein 56 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip09g03988 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 494 - -
Aip09g03988 510 PANTHER PROTEIN DETOXIFICATION 32 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03988 Aip-Chr9 146321586 146323348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03988 K03327 - gmx:100788027 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03774 05 145875851 145877500 Aip09g03988 09 146321586 146323348 ECH
Aip09g03988 09 146321586 146323348 Aip09g03988 09 146321586 146323348 ECH