Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03208 ATGCGGCACCATAAGTTTGTGGTGAGAGATGCTTCCTTCACAAAGCTTTGCAGCACAAAAAATATCTTAACAGTAAATGGAGAATTTCCAGGGCCAACATTGTATGTTACAAAAGGAGAAAGCATAATTGTTGATGTGTATAACAGAGCTAACTATAACATCACCATTCACTGGCATGGAGTGAACCAACCAAGATATCCATGGTCTGATGGCCCTGAATTCATCACTCAATGTCCCATTCAACCTGGTGGTTTGTTCTCTCAAAAGGTTATCTTTTCTGAAGAGGAAGGCACACTTTGGTGGCATGCTCACAGTGATTGGTCTCGTGCTACTGTTCACGGTGCTATTGTCATTAAACCCAAGCCTGGAAATACATATCCATTTCCAAAACCACACAAAGAGGTCCCCATTGTACTAGGTGAATGGTGGAAGGAAGACATTGTCCAAGTTTTCAATAACTTTGAAACGGGGGGAGGAGATCCCGTTGTTTCAGATGCTTATACTATCAATGGCCAACCTGGTGATCTTTATAATTGCTCAAACAAAGAAACCTTCAAAGTAAATGTGGAACATGGCAAGACATATCTTCTGAGAATGGTGCATGCTGGAATGCAAGACCTTCTCTTCTTTGGAATTGCGAAGCACCAATTGACAGTGGTGGGAAGCGATGGAAGCTATGTGAAGCCATTCAAAGTGGATTACATAACAATATCACCAGGTCAAACCATGGATGTGTTGCTTGAAGCTAATCAACCTTTGGATCGTTATTACATGGCTGCCAAAGTGTATTCAAGTGCTTCCAATGTTGCATTTGACAACACAACCACCACAGCCATTCTGCAATACAAAAAGGGAAAACACATTATTCCATCATTTTCATCAAGAACCCCTCACATGCCTTCACTTCCATCTTCCAATGACACCAATGCATCTATCAACATGATAAGTCAAATGAGAAGCTTAGCAGATGAAGCACATCCAATTGACGTGCCATTGAACATAACCACCAACCTGTTCTACACAGTTTCGGTGAATACATTACCATGTTCAACATGCGAAGGTAGTCATATACCAGGGAACCGCCTTGCAGCAAGTGTAAATAACATAAGCTTCCAATTGCCATCGGGAAACAACATTTTGAATGCTTACTATAACCACCTTCAAGGTGTATATACACAAGATTTTCCAGATGTGCCACCAGAACTATTTGATTTCACTGCTTCCAATTTGTCCACATTTCTTAGAACTCCATCGGTAGATACAGAGGTGAAGGTGCTTGAGTATGGGTCCACGGTGGAGCTTGTTCTTCAAGGGACTAATTTGCTGGCTGGTACTGAGCATCCAATGCACTTGCATGGCCATAGTTTCTATGTAGTTGGATGGGGATTCGGAAACTTTGACAAAGACAAAGATCCTCTCACATATAATCTTGTTGATCCTCCTTATCAGAATACCGTCGCTATACCCAAAAATGGATGGGTAACCATAAGATTCAAGACACAAAATCCAGGTGTGTGGTTCATGCATTGCCACTTAGAGCGACATCTGAGTTGGGGAATGGCTATGACTTTCATTGTCAAAAATGGAAAGAATCCTGAAGAGAAGATGTTGCCACCACCACGAGACATGCCACACTGTTAA 1641 0.418 MRHHKFVVRDASFTKLCSTKNILTVNGEFPGPTLYVTKGESIIVDVYNRANYNITIHWHGVNQPRYPWSDGPEFITQCPIQPGGLFSQKVIFSEEEGTLWWHAHSDWSRATVHGAIVIKPKPGNTYPFPKPHKEVPIVLGEWWKEDIVQVFNNFETGGGDPVVSDAYTINGQPGDLYNCSNKETFKVNVEHGKTYLLRMVHAGMQDLLFFGIAKHQLTVVGSDGSYVKPFKVDYITISPGQTMDVLLEANQPLDRYYMAAKVYSSASNVAFDNTTTTAILQYKKGKHIIPSFSSRTPHMPSLPSSNDTNASINMISQMRSLADEAHPIDVPLNITTNLFYTVSVNTLPCSTCEGSHIPGNRLAASVNNISFQLPSGNNILNAYYNHLQGVYTQDFPDVPPELFDFTASNLSTFLRTPSVDTEVKVLEYGSTVELVLQGTNLLAGTEHPMHLHGHSFYVVGWGFGNFDKDKDPLTYNLVDPPYQNTVAIPKNGWVTIRFKTQNPGVWFMHCHLERHLSWGMAMTFIVKNGKNPEEKMLPPPRDMPHC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03208 546 SUPERFAMILY Cupredoxins 356 546 IPR008972 -
Aip09g03208 546 CDD CuRO_3_LCC_plant 390 529 IPR034289 GO:0005507
Aip09g03208 546 CDD CuRO_1_LCC_plant 4 120 IPR034288 GO:0005507
Aip09g03208 546 Pfam Multicopper oxidase 10 121 IPR011707 GO:0005507
Aip09g03208 546 ProSitePatterns Multicopper oxidases signature 1. 504 524 IPR033138 -
Aip09g03208 546 ProSitePatterns Multicopper oxidases signature 2. 509 520 IPR002355 GO:0005507
Aip09g03208 546 SUPERFAMILY Cupredoxins 128 322 IPR008972 -
Aip09g03208 546 Pfam Multicopper oxidase 396 529 IPR011706 GO:0005507|GO:0016491
Aip09g03208 546 Gene3D - 132 323 IPR008972 -
Aip09g03208 546 SUPERFAMILY Cupredoxins 2 145 IPR008972 -
Aip09g03208 546 PANTHER LACCASE 7 546 - -
Aip09g03208 546 TIGRFAM laccase: laccase 2 546 IPR017761 GO:0046274|GO:0048046|GO:0052716
Aip09g03208 546 Gene3D - 2 129 IPR008972 -
Aip09g03208 546 Gene3D - 350 546 IPR008972 -
Aip09g03208 546 PANTHER MULTI-COPPER OXIDASE 7 546 IPR045087 -
Aip09g03208 546 CDD CuRO_2_LCC_plant 135 282 IPR034285 -
Aip09g03208 546 Pfam Multicopper oxidase 134 284 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03208 Aip-Chr9 137730938 137733133 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03208 K05909 - qsu:112034097 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03208 09 137730938 137733133 Aip09g03208 09 137730938 137733133 ECH
Aip05g04046 05 148653290 148655977 Aip09g03208 09 137730938 137733133 PCT