Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02780 ATGGCAAAGGGCGAAAAGAAACCGGCGGAGAAGAAGCCAGCGGAGAAGGCACCGGCGGAGAAAACCAAGGCGGAGAAGAAGATCCCGAAGGACGCGTCCTCCGGCGATAAGAAGAAGAAGAAGAAGGCGAAGAGCGTTGAGACCTACAAGATCTACATTTTCAAGGTTCTGAAGCAAGTTCATCCTGACATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAAGAATCTTCTAGACTCGCGAGGTATAACAAGAAACCAACCATTACTTCGAGGGAGATTCAAACCGCTGTGAGACTCGTGCTTCCCGGTGAACTTGCCAAGCATGCCGTTTCGGAAGGGACTAAAGCTGTCACTAAGTTTACAAGTTCTTGA 411 0.4891 MAKGEKKPAEKKPAEKAPAEKTKAEKKIPKDASSGDKKKKKKAKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02780 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PANTHER HISTONE H2B 4 136 - -
Aip09g02780 136 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Aip09g02780 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
Aip09g02780 136 PANTHER HISTONE H2B 4 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Aip09g02780 136 MobiDBLite consensus disorder prediction 1 45 - -
Aip09g02780 136 Pfam Core histone H2A/H2B/H3/H4 5 112 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02780 Aip-Chr9 127490455 127491104 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02780 K11252 - gmx:100305731 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00495 06 6087490 6090860 Aip09g02780 09 127490455 127491104 ECH
Aip09g02780 09 127490455 127491104 Aip09g02780 09 127490455 127491104 ECH