Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00495 ATGTGGGCTCTTCGTCGAGCTTCTCTTCCTCTCAGGAACCGAGGGTTTAATGTGAGAGCTTCTTGCATCAAATCAGTTTCGGGTACTCGGGTGGAAGATGATTCTAGTACGTTGGACTCATCTAGAATGGCATATGGTCGTTTTTTGTTGCCGAATATGTTCTACCATTCCGGGCATGCCTCCTTAAAATTCACTGTGAGTAGGCGCGAACTTTCTTCACAAGCTGATGCCAGTAGCACGAAAGATCAGGATGATTTGGAGGATGGGTTTTCTGAGCTTGAGACACCAGCTGCTGATTCTGAATATGGTAAAGACGAATTCAATGATATTAAAGATGGTGAGGAGCCACGCGAGGAGTTGGAGTTTTCAGACACTGAGGTTGAACCAAGTGAGAAAAAAGTACGTCGACGAGCTCAGTCCGAAATTTTCAAATTGATTGATAGTTCTCCAACTACTTCTGTTCATGTGCTTATGGATAAGTGGGTTGAAGAAGGGAAAGAACTAAGCAGACAAGATATCGCACTGGCCATGGTTAATCTTCGAAGGCGCAAACTGTATTTTAAAGCTTTTCAGCTCTCAGAGTGGGTTGTATCAAAAAGTCAGCTTGAAGTTACTGAGAGAGATCATGCTACCCGTGTTGATTTGATTGCTAAATTGCGTGGGTTACATGAAGCGGAGATGTACATTGAGCGTATTCCAGAATCTTTTAAAGGAGAGACAGTATATCAAACCCTTTTAGCAAGTTGTGTTGCTCAGAACAATTTGAAGAAAGCAGAGGAAACTTTCAACAAAATGAAAGATTTGAAATTCCCTCTTACATCATTTGTTTGGAATCAGTTGCTTCTTCTGTATAAGAGGCATGACAAGAAGAAAATAGCCGATGTATTGTTGATGATGGAAAATGAGAATGTCAAACCTTCGCCTTTTACTTATAAAATATTAATAGACGCAAAAGGCCAGTCCAAAGATATTGATGGCATGGATCTAATTGTTGAGAAAATGAAGGCTCAAGGGATTGAACCAGACATCCGAACAAAAGCAGTTTTGGTTGGACACTACAAAACTGCTGGGCTTGAAAAAAAAGCCGAAGATATGTTGAAGGAAATGGAAGGTGAAAATTTGGAAGAGAATTCTTGGCTTGGTCGATATTTGCTTCCTCTATACGCAAATCTGGGTAAGGCTGATGAAGTGGGAAGAATTTGGGAGGTCTGTCAGGCTTCCCCTCGAATTGAAGATTGTCTCGCTGCGATTGAAGCTTTTGGAAAGTTGAAGAAAATTGATGAAGCAGAGGCTGTTTTCGAAATGATATCAAAGAGGTGGAAGCTTTCTTCCAAGAACTACTCAGTCATGCTGAAGGTTTATGCAAATAATAAGATGCTAGCAAAGGGCAAAGATCTCATTAAGCGAATGGCAGAGAGCGGGTGTCAAATAGGCCCATTGACATTGGACGACCTAGTGAAACTTCACATCCAAGCAGGGGAAGTGGAGAAGGCAGACACTATTCTGCAAAAGGCTATCATGCAAAGCCAGTTGAAACCATTAATCATTTCTTATATTGCTATTATGGAGCAGTATGCTAAGAGGGGCGACGTCCATAATTCAGAAAAGATTTTGCACAAAATCAAACAAGCTGGCTACACGATTCGTCTGAGGCAATACCAAATTCTCGTACAGGCCTATATAAATGCCAAGCTTCCGGCCTATCGGATTAGGGACAGCATGAAGGCTGATAACGTATTTCCCAACAGGGATTTTGCAAATCTGTTGGCTCAAGTTGATGGTTTTAGGAAGAATCCAGCTTCGGATTTGCTTGATTGA 1818 0.4153 MWALRRASLPLRNRGFNVRASCIKSVSGTRVEDDSSTLDSSRMAYGRFLLPNMFYHSGHASLKFTVSRRELSSQADASSTKDQDDLEDGFSELETPAADSEYGKDEFNDIKDGEEPREELEFSDTEVEPSEKKVRRRAQSEIFKLIDSSPTTSVHVLMDKWVEEGKELSRQDIALAMVNLRRRKLYFKAFQLSEWVVSKSQLEVTERDHATRVDLIAKLRGLHEAEMYIERIPESFKGETVYQTLLASCVAQNNLKKAEETFNKMKDLKFPLTSFVWNQLLLLYKRHDKKKIADVLLMMENENVKPSPFTYKILIDAKGQSKDIDGMDLIVEKMKAQGIEPDIRTKAVLVGHYKTAGLEKKAEDMLKEMEGENLEENSWLGRYLLPLYANLGKADEVGRIWEVCQASPRIEDCLAAIEAFGKLKKIDEAEAVFEMISKRWKLSSKNYSVMLKVYANNKMLAKGKDLIKRMAESGCQIGPLTLDDLVKLHIQAGEVEKADTILQKAIMQSQLKPLIISYIAIMEQYAKRGDVHNSEKILHKIKQAGYTIRLRQYQILVQAYINAKLPAYRIRDSMKADNVFPNRDFANLLAQVDGFRKNPASDLLD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00495 605 TIGRFAM PPR: pentatricopeptide repeat domain 447 476 IPR002885 -
Aip06g00495 605 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Aip06g00495 605 TIGRFAM PPR: pentatricopeptide repeat domain 241 272 IPR002885 -
Aip06g00495 605 PANTHER OS12G0527900 PROTEIN 32 605 - -
Aip06g00495 605 Pfam PPR repeat 447 475 IPR002885 -
Aip06g00495 605 Pfam PPR repeat 517 545 IPR002885 -
Aip06g00495 605 Pfam PPR repeat 417 438 IPR002885 -
Aip06g00495 605 Gene3D Tetratricopeptide repeat domain 238 413 IPR011990 GO:0005515
Aip06g00495 605 Gene3D Tetratricopeptide repeat domain 415 600 IPR011990 GO:0005515
Aip06g00495 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Aip06g00495 605 Pfam Pentacotripeptide-repeat region of PRORP 238 400 IPR033443 -
Aip06g00495 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Aip06g00495 605 PANTHER OS01G0280400 PROTEIN 32 605 - -
Aip06g00495 605 MobiDBLite consensus disorder prediction 98 118 - -
Aip06g00495 605 MobiDBLite consensus disorder prediction 94 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00495 Aip-Chr6 6087490 6090860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00495 150 545 EF-hand Containing Proteins AT1G02150 24.878 2.38e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00495 - - mtr:MTR_7g089770 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00495 06 6087490 6090860 Aip09g02780 09 127490455 127491104 ECH
Aip06g00495 06 6087490 6090860 Aip06g00495 06 6087490 6090860 ECH