Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02232 ATGTCTCGAATACTCTTCACTACATGGAACAAGCACAGAAACAAGCTTCATCCCAACCCAAAAATCCTTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCACATGCCTACTTCACCCTTTCACCCCATCATCATCATCATCAGCAGCAGCAGCGTCACCGCGTCCTCGCCAACACCAGCACTTTCTTGTTCTACCATAGGCTACTCCAGCACCGCCACAAATGGGGCCGTGGAGGCTCGGACGACCCGATTACTCGGTCCCGGAGGATCCGAGCCGATCCGAATTGCCCACGCTGCTCCAGGGACATGATTGTAATTGACAACCTCAAGCTCCCAACTCGCCAGGGAGGTCACCAATTCAATGGTACTGTGAACCTTTGCCCCAATTGCAACGCTGCCTATTACTTCAGCCCTCATGGCGTTGCGCCTCTTCAAGGTAGCTTTTTGGAGATTGGGGCTCAGAGGGTTTCTGAAAAAAACGATCTTGATGATGATGATGATGATGTTGATTTTGATTCTACTAAGGTGCCTAGGAGAATCAGTGGGTTTGGTGGTAGAGTGTTGAATAGTAATGGTGGTGGTGGTGGTGATGGGGATAGTAATGCACCTGGTTCAGGTGATGGGAATGGTGGTGGTGGTGGTGTTGCTGTGCATAGTCCTCCAGGGCCACCTTTTGCTCCTGGTGTTAATGTTATAAGGGCTTCTGGGCCCCGAGAAGGTGGTTCCGGTGGCGGCAGTGGCAGTGAGAAGAGTTCATGGGGTGGTTCCAATTTGGGGAGGGACTTGCCAACTCCAAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTAATTGGCCAGGACAGGGCCAAAAAGGTTCTATCAGTAGCTGTTTATAACCACTACAAAAGAATATACCATGCTTCTCAACAGAAAGGGTCAGAGGCTGATTCTGGAATTCCAGAAGGATTAGATAATGATGATGTCGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAGACGCTAGCTCGGTTCGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCAAAAATGTTTTTTTTTTTGCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAATTACTGGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTGGACAAGATAACTAAGAAGGTAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGAGGTGATAATATACAGATCGACACAAAGAATATTCTTTTTATATGTGGGGGTGCCTTCATTGATCTTGAAAAAACAATTTCAGAGAGACGACATGATTCTTCCATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGGACTGGTCAACTAACAAATGCAGCCATAGCATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCGATTTTAATTAGCTTGTCAGCTTTAACTGAAGAACAGCTTATGCAGGTCCTCTCAGAACCGAAAAATGCACTCTCTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTAAAACTACACTTCACAGAGAAAGCTATGAGATTGATCGCCAAGAAAGCAATGGCAAAAAATACTGGCGCCAGGGGTTTAAGAGCCCTACTGGAAAACATTTTAACTGAAGCCATGTATGAGATTCCAGATGTCAAGACAGGAAACGAACAGATTGATGCAGTTGTTGTCGATGAGGAATCAGTAGGATCGGTAAATGCCGTCGGTTGCGGAGGAAAAATTCTCCGCGGCGAAGGTGCTTTGGAGCGGTACCTTGCTAAGATGGAGGACTCAAAGGTTAAGGGTGATGTAGCTGAATCTGACATGCAAGATGGGGAACAAGAGATCACATCAAGAGCAATGAGCATCATAGCTACATTGGATAGGAAGGAAACAGAAAGAAATGAAAGATGTAGCATTGCTAGTTTAGGCAGCACTTAA 2052 0.4498 MSRILFTTWNKHRNKLHPNPKILSSSSSSSSSSHAYFTLSPHHHHHQQQQRHRVLANTSTFLFYHRLLQHRHKWGRGGSDDPITRSRRIRADPNCPRCSRDMIVIDNLKLPTRQGGHQFNGTVNLCPNCNAAYYFSPHGVAPLQGSFLEIGAQRVSEKNDLDDDDDDVDFDSTKVPRRISGFGGRVLNSNGGGGGDGDSNAPGSGDGNGGGGGVAVHSPPGPPFAPGVNVIRASGPREGGSGGGSGSEKSSWGGSNLGRDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASQQKGSEADSGIPEGLDNDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAKMFFFLQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPVRANMRTGQLTNAAIASSLLESVESADLIAYGLIPEFIGRFPILISLSALTEEQLMQVLSEPKNALSKQYKKLFSMNNVKLHFTEKAMRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDVKTGNEQIDAVVVDEESVGSVNAVGCGGKILRGEGALERYLAKMEDSKVKGDVAESDMQDGEQEITSRAMSIIATLDRKETERNERCSIASLGST 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02232 683 MobiDBLite consensus disorder prediction 157 262 - -
Aip09g02232 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 602 IPR027417 -
Aip09g02232 683 SMART ClpB_D2_small_2 516 609 IPR019489 -
Aip09g02232 683 PANTHER OS01G0886600 PROTEIN 77 412 - -
Aip09g02232 683 PANTHER OS01G0886600 PROTEIN 413 653 - -
Aip09g02232 683 SMART AAA_5 323 467 IPR003593 -
Aip09g02232 683 CDD AAA 324 464 - -
Aip09g02232 683 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 77 412 - -
Aip09g02232 683 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 413 653 - -
Aip09g02232 683 Pfam AAA domain (Cdc48 subfamily) 323 509 IPR003959 GO:0005524|GO:0016887
Aip09g02232 683 Gene3D - 256 514 IPR027417 -
Aip09g02232 683 Pfam C-terminal, D2-small domain, of ClpB protein 516 586 IPR019489 -
Aip09g02232 683 Gene3D - 515 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02232 Aip-Chr9 102395995 102402111 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02232 K03544 - qsu:112016309 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02232 09 102395995 102402111 Aip09g02232 09 102395995 102402111 ECH
Aip05g03692 05 144906949 144912171 Aip09g02232 09 102395995 102402111 PCT