LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g03692	ATGTCACGAATCTTCTCGAGATGGAAGAAGGTGAAGGAAGTGGCGTCACTCTCCGACACCCATTTGGTCGATTCTCCGGTTAACATGACCCGAATTCGGAACCGAACCGGTTTGAATTACCGGTTCAACCGTGTGCGCCCAATCTCGACCCATCTGAATCACCATATCCACATCACTGGCGGGGTCGGACATCATCGCCGGCGGGAGGCACTCGTCGGAGTTCAGGAGCGGTACAAATGGGACCGGGGTGGATCCGATGACAACCCGATCCGGAAGATTCGGGCAGAGGCAAACTGCCCGCGTTGCAGCAAGGACATGAACCTCGTATTCTCCAATCGCCATTTTCCGACCACATCAGCTTCTGATTCTGATTCAGGTTCTGGTTCGAGTTTGGCGCTACATGTTCCTGTGAATGGTGGTGGAGAAGCTGGTAGTGCTGGTTACCAAGCGGTGAATCTGTGTCCAACTTGCAAAACCGCTTATTACTTTAAACCTTTCAGCACTTCACCATTGCAAGGTACCTTTGTGGAGATTGGGAGGGTAACTAATAGTGGCAGCAATGGCAATGGCAATGGCAGTGGCAAATCTCAATCTTCTAGGAGGATCACACATGGGAAGAATGGTGGTGGTGGTAAAGAGGGTGGTGGAAATAGTAGTGGTCATGGTGGTGGTGATGGTGAAGATTATGGTTCTAAGAATGGTGGTGGTGGTAGCTGGCTTGAGGCTTCATTGTGGGACACTTTAAGGTCCTACAATGGTGGCGGTAATAGCGGGGAGCCACCTGAGGTATGGCCTCCACCACCAGGTGGTAACAATGTGAATGGTTTGGCTGTTCATAATCCTCCAGGGCCGCCTTTCGTGCATGGGATGAATATGCGTGCTCCGGGGTCCCGGGAAGGTGGCTCTGGCGGTAGAGGTGGAGGTGGCGGAAATGAAGAGAAGACTTCTTGGGGAGGGTCTAATTTGGGTAAGGATTTGCCATCCCCAAAGGAGATTTGTAAGGGACTTGACAAGTTTGTAATTGGACAAGAGAGAGCTAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATTCCACTTTGCAGAAAGGGTCAGGGGCAGATCCTGGAGTTTCAGAGGGGTTAGATGATGACGATAATGTTGAGCTAGAAAAAAGTAATGTTCTTCTCATGGGTCCAACAGGATCAGGGAAGACGCTACTCGCGAAAACACTAGCTAGATTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAGTATGCACTCATTGATTCGGTCATCAGATTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGTTGTTAGCAAATTAGTTTCCCGTGTTTTAAATGTTCCTGAGAAAGGGGCTAGGAAGCATCCGCGGGGTGATAACATACAGATGGACACAAAGAATATTCTTTTCATTTGTGGCGGAGCATTTATTGATCTTGAAAAGACCATTTCAGAGAGACGTCAAGATTCTTCTATTGGTTTCGGAGCCCCAGTTCGTGCTAACATGAGAGCTGGTGGAATAATTGATGCTGTGCTAACATCATCTTTACTTGAGTCGGTGGAGAGTTCCGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCCATCTTAGTGAGCTTGACAGCTTTAACTGAAGAGCAACTTATGATGGTCCTATCAGAACCAAAGAATGCTCTTGGAAAGCAGTACAAGAAATTATTCAGCATGAATGACGTAAAGCTACATTTCACAGATAAAGCTCTCAGACTGATTGCACAGAAAGCAATGGCCAAAAATACCGGTGCCAGAGGTTTAAGAGCCCTACTCGAAAGTATTTTAACCGACACAATGTTTGAGGTTCCAGAGCTTAAGACCGGAGATGATCGAATCGATGCAGTAGTTGTTGATGAAGAGTCAGTAGGATCAATAAACACCCCTGGATGTGGAGGAAAAATTCTTCGTGGAGACAATGCTTTGGAGAAATACCTCGCTAAGACGAAGGATTCACAGGAAAATGTTAACTTAGCTGAATCAGACTCACAAGATGGAGATTCAGAGCTTTCATCAAGGGCCATGAGCTTGTAA	2154	0.4624	MSRIFSRWKKVKEVASLSDTHLVDSPVNMTRIRNRTGLNYRFNRVRPISTHLNHHIHITGGVGHHRRREALVGVQERYKWDRGGSDDNPIRKIRAEANCPRCSKDMNLVFSNRHFPTTSASDSDSGSGSSLALHVPVNGGGEAGSAGYQAVNLCPTCKTAYYFKPFSTSPLQGTFVEIGRVTNSGSNGNGNGSGKSQSSRRITHGKNGGGGKEGGGNSSGHGGGDGEDYGSKNGGGGSWLEASLWDTLRSYNGGGNSGEPPEVWPPPPGGNNVNGLAVHNPPGPPFVHGMNMRAPGSREGGSGGRGGGGGNEEKTSWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHSTLQKGSGADPGVSEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASMHSLIRSSDFNVAAAQQGIIYIDEVDKITKKVVSKLVSRVLNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGIIDAVLTSSLLESVESSDLIAYGLIPEFIGRFPILVSLTALTEEQLMMVLSEPKNALGKQYKKLFSMNDVKLHFTDKALRLIAQKAMAKNTGARGLRALLESILTDTMFEVPELKTGDDRIDAVVVDEESVGSINTPGCGGKILRGDNALEKYLAKTKDSQENVNLAESDSQDGDSELSSRAMSL	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g03692	717	Gene3D	-	320	571	IPR027417	-
	Aip05g03692	717	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	49	716	-	-
	Aip05g03692	717	MobiDBLite	consensus disorder prediction	250	328	-	-
	Aip05g03692	717	TIGRFAM	clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX	323	664	IPR004487	GO:0005524\|GO:0006457\|GO:0051082\|GO:0140662
	Aip05g03692	717	MobiDBLite	consensus disorder prediction	182	235	-	-
	Aip05g03692	717	SMART	ClpB_D2_small_2	573	666	IPR019489	-
	Aip05g03692	717	Pfam	AAA domain (Cdc48 subfamily)	389	566	IPR003959	GO:0005524\|GO:0016887
	Aip05g03692	717	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	49	716	-	-
	Aip05g03692	717	MobiDBLite	consensus disorder prediction	693	717	-	-
	Aip05g03692	717	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	325	656	IPR027417	-
	Aip05g03692	717	Pfam	C-terminal, D2-small domain, of ClpB protein	573	644	IPR019489	-
	Aip05g03692	717	Gene3D	-	572	672	-	-
	Aip05g03692	717	CDD	AAA	390	521	-	-
	Aip05g03692	717	MobiDBLite	consensus disorder prediction	182	204	-	-
	Aip05g03692	717	SMART	AAA_5	389	558	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g03692	Aip-Chr5	144906949	144912171	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g03692	K03544		-	gmx:100805340	909.827

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip05g03692	05	144906949	144912171	Aip09g02232	09	102395995	102402111	PCT