Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01359 ATGAGGCACTCTCAATATATCTTAGCATTTTTCTTCACTTTAATTCTTACAACTCAAGCAAGACACCATCACCATACAAAACACAAACACTCTTCACATTCTAATAATAATGACAATAATACTAATAATCAATCATATCCTCCTTCTCCTTCTCCTTCTCCTTCTTCCGGAATTTCAATGCCTCCTGTGGCTGCACCCGGTGGTTATGATAATGAAGCTCCTAGTCCTAGTCCCTCTGATGATGATGGCTCCGAAATCTTCAATGTTCGAACATTTGGGGCCATTGGAGATGGTATAGCTGATGATACAAAGTCCTTCAAGATGGCGTGGGACAGTGCTTGCCAAAGTGATTCAGCAATTAACATTGTACTTGTTCCTCGCGGTTTCTCGTTCATGGTCCAGTCTACAATCTTCACTGGTCCCTGTCAAGGTGGCTTAGTGTTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGAATCTTGGCCAAACAACACAAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATAATATGTCACTACAAGGAAGTGGTGTTATTGATGGCAGAGGACAAAATTGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGGACTACACTTCCAGGACCTTGTGATAGCCCAGTTGCATTAAGGTTTTTCATGAGTTCAAACTTGAGTGTGCAAGGACTTAGAATCAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTTCGAGTAGATTCAATCTTCATAACATCTCCAGCACTAAGTCCCAACACTGATGGAATACACATAGAAAACACAAATGACGTAAGGATATACAATTCCGTCATTTCCAACGGTGATGACTGTGTGTCCATTGGAACGGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCCAGCCACGGAATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCCTGTGTGTCAAACATTACAGTAAGAGAGTCAACGATCAAAGGGTCAGACAATGGAGTAAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTATCAAAAGTAACATTCAGCAAGATTCACATGGAGAGTGTACGGAACCCAATAATAATCGACCAATTCTATTGCCTATCGAAAGATTGCAGCAACAAAAGCTCGGCAGTATTTGTATCAGACATAGTATACTCAAACATAAAGGGGACATATGATATAAGGCACCCACCCATGCGTTTCGCTTGCAGTGACTCTGTGCCTTGCACTAACTTAACTCTTTCTGATATTGAGCTTCTTCCTGCACAGGGTGATCTTTTTAATGACCCTTTCTGTTGGAATGCTTATGGCAATTTGGAGACACTAACTATTCCTCCTGTTTCTTGCTTGATTGAGGGTCTTCCTCAGTCTCTTCCAGGGAATGATTTATCTCGTTGTTGA 1452 0.4187 MRHSQYILAFFFTLILTTQARHHHHTKHKHSSHSNNNDNNTNNQSYPPSPSPSPSSGISMPPVAAPGGYDNEAPSPSPSDDDGSEIFNVRTFGAIGDGIADDTKSFKMAWDSACQSDSAINIVLVPRGFSFMVQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPNNTSRRQWLVFYRINNMSLQGSGVIDGRGQNWWDLPCKPHKGPNGTTLPGPCDSPVALRFFMSSNLSVQGLRIKNSPQFHFRFDGCKSVRVDSIFITSPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGTGCYDVDIKNITCGPSHGISIGSLGNHNSRACVSNITVRESTIKGSDNGVRIKTWQGGSGSVSKVTFSKIHMESVRNPIIIDQFYCLSKDCSNKSSAVFVSDIVYSNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDLFNDPFCWNAYGNLETLTIPPVSCLIEGLPQSLPGNDLSRC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01359 483 Pfam Glycosyl hydrolases family 28 118 436 IPR000743 GO:0004650|GO:0005975
Aip09g01359 483 Gene3D - 71 467 IPR012334 -
Aip09g01359 483 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 75 473 - -
Aip09g01359 483 SUPERFAMILY Pectin lyase-like 85 469 IPR011050 -
Aip09g01359 483 MobiDBLite consensus disorder prediction 23 86 - -
Aip09g01359 483 ProSitePatterns Polygalacturonase active site. 307 320 IPR000743 GO:0004650|GO:0005975
Aip09g01359 483 PANTHER - 75 473 - -
Aip09g01359 483 SMART pbh1 300 320 IPR006626 -
Aip09g01359 483 SMART pbh1 277 298 IPR006626 -
Aip09g01359 483 SMART pbh1 330 351 IPR006626 -
Aip09g01359 483 SMART pbh1 227 276 IPR006626 -
Aip09g01359 483 SMART pbh1 359 380 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01359 Aip-Chr9 23537497 23543252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01359 81 483 Glycoside Hydrolase AT1G02460 70.690 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01359 - - gmx:100776338 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00742 06 9953507 9956709 Aip09g01359 09 23537497 23543252 ECH
Aip09g01359 09 23537497 23543252 Aip09g01359 09 23537497 23543252 ECH
Aip06g00742 06 9953507 9956709 Aip09g01359 09 23537497 23543252 PCT