Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00742 ATGCCACCAGATGGACCTGATTCTTGGCCAAAGAACAATACTAAGCGTCTATGGCTGGTGTTTTATAGAATTAATGGAATGTCACTTGAAGGAGGTGGTTTAATAGATGGAAGAGGAGATAAATGGTGGGAACTTCCTTGTAAGCCTCACAGGGGACCAAATGGAACAACTGCTCCTGGACCTTGTGATAGCCCAATGGCCATAAATTTTTTTATGGGTTCCAACTTGACTGTGCAAGAACTTAGGGTCAGGGACAGCCCCCAGATTCATTTAAGATTTGATGCATGCAGAAGTGTCCACATTGAATCTATCCATATAAAAGCTCCAAGACTAAGCCCCAACACTGATGGAATTCACATAGAAAACAGCACTGATGTCAAAATATATAATACTGTGATTTCTAATGGTGATGATTGTGTGTCCATTGGAACCGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCTGGTCATGGAATCAGCATTGGTAGCTTGGGAAAGTACAACTCTAGAGCATGTGTTTCAAACATTAAGGTGAGAGACTCAGTTATTCAGATGACAGACAATGGAGTTAGGATCAAGACATGGCAAGGTGGATCAGGATATGTATCAGGAATAACATTCAGCAACATTCATATGTATAATGTTAGAAACCCCATGATAATAGACCAATTCTATTGCCTCAAAGAGGGTGAAGTGTGCAGAAACAAAACCTCTGCAGTGGTTGTATCAGACATTCTATACAGAAACATAAAGGGAACATATGATATAAGGAGCCCTCCTATGAGATTTGCATGCAGTGACAGTGTTCCATGCACCAACTTAACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGATATGGTTGTTGATCCTTTCTGTTGGAATGCTTATGGTGATCTCAGGACACAAACCATTCCACCAGTTTTTTGCTTGCTTGATGGATTTCCTCAGTCCATCTTGCACAATGACATAGCTCATTGCACGCGGTATTCATGA 1008 0.4087 MPPDGPDSWPKNNTKRLWLVFYRINGMSLEGGGLIDGRGDKWWELPCKPHRGPNGTTAPGPCDSPMAINFFMGSNLTVQELRVRDSPQIHLRFDACRSVHIESIHIKAPRLSPNTDGIHIENSTDVKIYNTVISNGDDCVSIGTGCYDVDIKNITCGPGHGISIGSLGKYNSRACVSNIKVRDSVIQMTDNGVRIKTWQGGSGYVSGITFSNIHMYNVRNPMIIDQFYCLKEGEVCRNKTSAVVVSDILYRNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPDQGDMVVDPFCWNAYGDLRTQTIPPVFCLLDGFPQSILHNDIAHCTRYS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00742 335 ProSitePatterns Polygalacturonase active site. 153 166 IPR000743 GO:0004650|GO:0005975
Aip06g00742 335 Pfam Glycosyl hydrolases family 28 12 284 IPR000743 GO:0004650|GO:0005975
Aip06g00742 335 PANTHER - 1 321 - -
Aip06g00742 335 Coils Coil 334 335 - -
Aip06g00742 335 Gene3D - 4 314 IPR012334 -
Aip06g00742 335 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 1 321 - -
Aip06g00742 335 SUPERFAMILY Pectin lyase-like 3 318 IPR011050 -
Aip06g00742 335 SMART pbh1 205 226 IPR006626 -
Aip06g00742 335 SMART pbh1 176 197 IPR006626 -
Aip06g00742 335 SMART pbh1 123 144 IPR006626 -
Aip06g00742 335 SMART pbh1 96 122 IPR006626 -
Aip06g00742 335 SMART pbh1 146 166 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00742 Aip-Chr6 9953507 9956709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00742 3 331 Glycoside Hydrolase AT1G02460 68.580 2.00e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00742 - - gmx:100776338 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00742 06 9953507 9956709 Aip06g00742 06 9953507 9956709 ECH
Aip06g00742 06 9953507 9956709 Aip09g01359 09 23537497 23543252 ECH
Aip06g00742 06 9953507 9956709 Aip09g01359 09 23537497 23543252 PCT