Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00790 ATGGCAGCAAAATGTTCAAGTATAGAGCAACGAAGTGGTCGTATCTATTCGAATGACTTTTCAATTCTTGTAGAAGAAGGAAGTGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGCAAATCATGTCTTCTTCTGAGATTTGCTGATGATTCATACATTGAGAGCTACATTAGCACCATCGGAGTTGATTTTAAAATACGAACTGTTGAGCAGGATGGGAAGACGATTAAACTTCAGATTTGGGATACTGCTGGACAAGAACGGTTTAGAACAATAACCAGTAGCTACTATCGCGGGGCACATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATCGATCGCTATGCTAGTGACAACGTCAACAAACTCTTAGTTGGAAACAAGAGTGATCTGACAGCAAATAGAGTTGTCTCATATGAAACAGCCAAAGCGTTTGCCGATGAAATAGGCATTCCTTTTATGGAAACTAGTGCAAAAGACTCTACAAATGTCGAACAAGCATTCATGGCCATGTCTGCTGCCATCAAGAATAGAATGGCGAGCCAACCAGCCGCAAACAATGCAAGGCCTCCCACAGTGCAGATCAAAGGACAGCCAGTTGGACAGAAAAGTGGGTGTTGCTCTTCCTAG 681 0.42 MAAKCSSIEQRSGRIYSNDFSILVEEGSDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMSAAIKNRMASQPAANNARPPTVQIKGQPVGQKSGCCSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00790 226 Pfam Ras family 33 192 IPR001806 GO:0003924|GO:0005525
Aip09g00790 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 211 IPR027417 -
Aip09g00790 226 SMART ras_sub_4 29 195 - -
Aip09g00790 226 PANTHER LD21953P-RELATED 25 225 - -
Aip09g00790 226 PRINTS Transforming protein P21 ras signature 170 192 - -
Aip09g00790 226 PRINTS Transforming protein P21 ras signature 55 71 - -
Aip09g00790 226 PRINTS Transforming protein P21 ras signature 32 53 - -
Aip09g00790 226 PRINTS Transforming protein P21 ras signature 135 148 - -
Aip09g00790 226 PRINTS Transforming protein P21 ras signature 73 95 - -
Aip09g00790 226 ProSiteProfiles small GTPase Rab1 family profile. 27 226 - -
Aip09g00790 226 ProSiteProfiles small GTPase Rho family profile. 25 197 - -
Aip09g00790 226 SMART arf_sub_2 12 196 - -
Aip09g00790 226 Gene3D - 24 220 IPR027417 -
Aip09g00790 226 ProSiteProfiles small GTPase Ras family profile. 26 226 IPR001806 GO:0003924|GO:0005525
Aip09g00790 226 SMART rho_sub_3 34 194 IPR001806 GO:0003924|GO:0005525
Aip09g00790 226 MobiDBLite consensus disorder prediction 198 226 - -
Aip09g00790 226 TIGRFAM small_GTP: small GTP-binding protein domain 30 187 IPR005225 GO:0005525
Aip09g00790 226 SMART rab_sub_5 32 195 - -
Aip09g00790 226 ProSiteProfiles small GTPase Arf family profile. 25 192 - -
Aip09g00790 226 CDD Rab1_Ypt1 30 195 - -
Aip09g00790 226 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 25 225 - -
Aip09g00790 226 SMART ran_sub_2 37 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00790 Aip-Chr9 10117823 10121122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00790 27 131 EF-hand Containing Proteins AT5G27540 26.415 2.96e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00790 K07874 - gmx:100306147 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00790 09 10117823 10121122 Aip09g00790 09 10117823 10121122 ECH
Aip09g00790 09 10117823 10121122 Aip04g03146 04 125105395 125108450 PCT