Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g03146 | ATGAATCCCGAATATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCGGGTGTTGGAAAATCATGTCTTCTTCTGAGATTTGCCGATGATTCATACATTGAGAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACTGTTGAGCAGGATGGAAAAACCATTAAACTCCAAATTTGGGACACAGCTGGGCAAGAACGATTCAGGACAATTACCAGTAGCTACTATCGCGGGGCACATGGCATCATTATTGTTTATGATGTGACAGACGAAGAGAGCTTCAACAATGTGAAGCAGTGGCTCAGCGAAATCGACCGTTACGCCAGTGATAATGTTAACAAACTTTTGGTTGGCAACAAGTGTGATCTGACATCAAACAGAGCTGTGTCATATGAAACAGCCAAAGCATTCGCAGATGAAATAGGCATTCCTTTCATGGAAACAAGTGCAAAAGATGCTACAAATGTTGAACAGGCATTCATGGCCATGTCTGCTTCCATCAAGACCAGAATGGCAAGCCAACCTGCAAACAATGCAAGGCCTCCAACAGTGCAGATCAGAGGACAGCCAGTTCAGCAGAGCAGTGGTTGCTGCTCATCCTAA | 609 | 0.4335 | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTSNRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKTRMASQPANNARPPTVQIRGQPVQQSSGCCSS | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g03146 | 202 | SMART | rab_sub_5 | 9 | 172 | - | - | |
| Aip04g03146 | 202 | SMART | ran_sub_2 | 14 | 199 | - | - | |
| Aip04g03146 | 202 | MobiDBLite | consensus disorder prediction | 173 | 202 | - | - | |
| Aip04g03146 | 202 | SMART | rho_sub_3 | 11 | 171 | IPR001806 | GO:0003924|GO:0005525 | |
| Aip04g03146 | 202 | SMART | ras_sub_4 | 6 | 172 | - | - | |
| Aip04g03146 | 202 | PANTHER | LD21953P-RELATED | 6 | 201 | - | - | |
| Aip04g03146 | 202 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 202 | - | - | |
| Aip04g03146 | 202 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 178 | IPR027417 | - | |
| Aip04g03146 | 202 | Gene3D | - | 2 | 197 | IPR027417 | - | |
| Aip04g03146 | 202 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 164 | IPR005225 | GO:0005525 | |
| Aip04g03146 | 202 | PANTHER | RAS-RELATED PROTEIN RABD2A-LIKE | 6 | 201 | - | - | |
| Aip04g03146 | 202 | Pfam | Ras family | 10 | 169 | IPR001806 | GO:0003924|GO:0005525 | |
| Aip04g03146 | 202 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Aip04g03146 | 202 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Aip04g03146 | 202 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Aip04g03146 | 202 | PRINTS | Transforming protein P21 ras signature | 112 | 125 | - | - | |
| Aip04g03146 | 202 | PRINTS | Transforming protein P21 ras signature | 147 | 169 | - | - | |
| Aip04g03146 | 202 | CDD | Rab1_Ypt1 | 7 | 172 | - | - | |
| Aip04g03146 | 202 | ProSiteProfiles | small GTPase Ras family profile. | 1 | 202 | IPR001806 | GO:0003924|GO:0005525 | |
| Aip04g03146 | 202 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 174 | - | - | |
| Aip04g03146 | 202 | ProSiteProfiles | small GTPase Arf family profile. | 2 | 169 | - | - | |
| Aip04g03146 | 202 | SMART | arf_sub_2 | 1 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g03146 | Aip-Chr4 | 125105395 | 125108450 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g03146 | 10 | 134 | EF-hand Containing Proteins | AT5G27540 | 25.984 | 3.54e-06 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g03146 | K07874 | - | gmx:100813403 | 392.504 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip04g03146 | 04 | 125105395 | 125108450 | Aip04g03146 | 04 | 125105395 | 125108450 | ECH | |
| Aip09g00790 | 09 | 10117823 | 10121122 | Aip04g03146 | 04 | 125105395 | 125108450 | PCT |