Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00596 ATGAACGGTGGTGATGATAAGGTTGCAGCTCCGGCGGGTCCACCGCAACCGCTGGAGTGGAAATTCTCGCAGGTGTTCGGCGAACGTGCGGCCGGTGAAGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCCGGTGATCATCTAGCTACTGGTGATCGTGGCGGTCGAGTAGTTCTTTTTGAGAGGACAGATTCAAAAGATCATGGTGTACCACGAAGGGATTTGGAGAGGATGGACAATTCTCTTACTAGGCATCCTGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTGTTCCTTCTATCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGATCAAGAAAATTTCTGACATGAATGTTGACCATTTGAAAGCAGTGGGAAATGTCTCTAGTTCAAGTAATTCCAGTAGCTCCATTCCTTACCTTGCAAATGGAGGCTTATCAATTCCACCAGGAGGCATACCTTCACTAAAATTACCTGTGGTAGTTGTAACCAGCAATGAGACCAGTCTGATGGCTCGATGTCGTAGAGTGTATGCCCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGTGACGGTGAAACTTTCATATCGGCTGATGATTTGCGAATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACGTCGGCAGAATTTCACCCCACTCATTGCAACACACTGGCATATAGTAGTTCAAAAGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCGCTCTGTGATTCTCACACCAAAATATTTGAGGAGCATGAGGCCCCTGGCTCCAGATCATTTTTCACAGAGATTATAGCTTCTATCTCAGACATAAAATTTGCAAAGGATGGAAGACATATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATCAACATGGATTCTGGTCCAGTTGCTACATTCCAGGTTCATGAGTATTTAAGACCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTTCAACGGGTTCCTACAGTAATTTATTCCGTGTGTTTGGTTGTGCCCCCGGTAGTGCTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGGCAAGTTCCAACCCCTTCAAGGCCTTCCAGATCACTGGGAACTAGTATAACACGAGTTGTAAGACGCGGAGCTGATGGAGTTGATGCAAATGGCAATTCTTTTGATTTCACAACAAAGTTGCTACACTTAGCGTGGCACCCAACTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTAA 1506 0.419 MNGGDDKVAAPAGPPQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSKDHGVPRRDLERMDNSLTRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISDMNVDHLKAVGNVSSSSNSSSSIPYLANGGLSIPPGGIPSLKLPVVVVTSNETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHTKIFEEHEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGTSITRVVRRGADGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00596 501 SUPERFAMILY WD40 repeat-like 39 493 IPR036322 GO:0005515
Aip09g00596 501 SMART WD40_4 261 301 IPR001680 GO:0005515
Aip09g00596 501 SMART WD40_4 211 250 IPR001680 GO:0005515
Aip09g00596 501 SMART WD40_4 105 145 IPR001680 GO:0005515
Aip09g00596 501 SMART WD40_4 31 66 IPR001680 GO:0005515
Aip09g00596 501 SMART WD40_4 308 358 IPR001680 GO:0005515
Aip09g00596 501 Pfam WD domain, G-beta repeat 214 250 IPR001680 GO:0005515
Aip09g00596 501 Gene3D - 76 499 IPR015943 GO:0005515
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 222 249 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 388 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 389 415 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 470 499 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 335 362 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 307 334 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 278 306 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 250 277 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 501 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 220 234 IPR018067 -
Aip09g00596 501 PIRSF PPA2_B55 11 501 IPR000009 GO:0000159|GO:0019888
Aip09g00596 501 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Aip09g00596 501 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00596 Aip-Chr9 6620849 6627949 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00596 K04354 - gmx:100799449 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00596 09 6620849 6627949 Aip08g00226 08 1588881 1596099 ECH
Aip09g00596 09 6620849 6627949 Aip09g00596 09 6620849 6627949 ECH
Aip08g00226 08 1588881 1596099 Aip09g00596 09 6620849 6627949 PCT