Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00226 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGAACCCTCTGGAGTGGAAATTCTCGCAGGTTTTCGGCGAACGCACGGCCGGTGAAGAGGTTCAGGAAGTTGACATAATTTCTGCTATTGAATTTGACAAATCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTATTTGAGAGGACAGATACAAAAGATGCTGGTGGATCAAGAAGGGATCGGGAGAGGATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCCGAGTTTGACTATCTCAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAAATCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAAGCAATGGGAAATGGCAGTATTGGTAGTTCAAGTAGTTCTAGGGCATATCTTGCAAATGGAGGAGCTCCAGATAGATCACACAATAACCTAAGCAATGACTACTCATTTCCACCAGGAGGCATTCCATCACTAAAGTTACCTGTGGTAGTAAGTAGCCAGGAGACGAGTTTATTGGCTCGGTGTCGCAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCCGATGATTTGCGTATAAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTAATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATACAGCAGTTCAAAGGGTTCAATCCGCCTAGTTGACTTGCGGCAATCAGCATTATGTGATTCGCATACCAAATTGTTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTCACCGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGCCGTGATTATATGACTCTAAAGCTATGGGACATAAATATGGATTCAGGCCCGGTTGCAACTTTCCAGGTTCACGAGTATTTAAGACCTAAGCTTTGTGATCTATATGAAAATGATTCAATTTTTGACAAGTTCGAGTGTTGTCTGAGCGGTGATGGGTTGCGTATTGCTACAGGCTCTTACAGCAACTTATTCCGTGTGTTCGGTTGTGCCCTGGGAAGTGCCGAGGCTACAACCTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCACTACACCGAGGCAAAGATCCCTCGGAAACAGTATAACAAGAGTTGTAAGACGAGGTACAGAAGCCCCAGGCGTTGACGCGAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTGGCATGGCATCCAACTGAGAATTCAATCGCCTGCGCGGCCGCAAATAGCTTGTATATGTACTATGCGTAA 1542 0.43 MNGGDEVVAAPAGPPNPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDAGGSRRDRERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISEMNVDPSKAMGNGSIGSSSSSRAYLANGGAPDRSHNNLSNDYSFPPGGIPSLKLPVVVSSQETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHTKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRIATGSYSNLFRVFGCALGSAEATTLEASKNPMRRQVPTTTPRQRSLGNSITRVVRRGTEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00226 513 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Aip08g00226 513 Gene3D - 75 511 IPR015943 GO:0005515
Aip08g00226 513 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 230 244 IPR018067 -
Aip08g00226 513 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 513 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 SUPERFAMILY WD40 repeat-like 39 505 IPR036322 GO:0005515
Aip08g00226 513 SMART WD40_4 372 426 IPR001680 GO:0005515
Aip08g00226 513 SMART WD40_4 221 260 IPR001680 GO:0005515
Aip08g00226 513 SMART WD40_4 105 145 IPR001680 GO:0005515
Aip08g00226 513 SMART WD40_4 330 368 IPR001680 GO:0005515
Aip08g00226 513 SMART WD40_4 31 66 IPR001680 GO:0005515
Aip08g00226 513 SMART WD40_4 271 311 IPR001680 GO:0005515
Aip08g00226 513 PIRSF PPA2_B55 11 513 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 MobiDBLite consensus disorder prediction 162 186 - -
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 232 259 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 260 287 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 288 316 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 317 344 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 345 372 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 373 398 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 399 425 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 482 511 IPR000009 GO:0000159|GO:0019888
Aip08g00226 513 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Aip08g00226 513 MobiDBLite consensus disorder prediction 165 180 - -
Aip08g00226 513 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00226 Aip-Chr8 1588881 1596099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00226 K04354 - gmx:100799449 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00596 09 6620849 6627949 Aip08g00226 08 1588881 1596099 ECH
Aip08g00226 08 1588881 1596099 Aip08g00226 08 1588881 1596099 ECH
Aip08g00226 08 1588881 1596099 Aip09g00596 09 6620849 6627949 PCT