Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00475 ATGGCTTCCGTGCCCTTCTTCTCTCGTTTCCATTTGCTTCCTTTAAACCAATCATCATTTCCACCAAATTCAACCTTTCACCTTCACCTTCACAACCCACAACACCCATTCACCGCCAATGCAAACCCCTCTTCTTCTGATCACAAAGCTCAAGACTTTGCCACAAACCCAGTTCAGGGAATCGGTGGCGCTCCGAAGAAGAAGAAGGCCAAGGAGAAGGTTCACTGGGTTTGCAGCAATTGCGGCTACAGTGCAGGGCAATGGTGGGGTGTGTGCAGGTCATGTGGTGAAGCTGGAACCATGAAAGAGTTTCATGAAACCAAAGGAAGTGACAACAAGGTGAGTGGTTTTGCTGTTATGGATGGTGCTGTTGGGTCATGGCTACCTCACCAGGAAGAAACTCAGTTGCGTCCATTGAGATTGTCTGAGGTCAATAGAGGTCTTGATCAGCTTCATTGGAGGATTCCATTAAATGGTCCTTGTGGAAATGAAGTTTCTAGAGTGCTTGGTGGAGGCCTTGTACCAGGCTCTTTGACTTTAGTTGGTGGCGATCCTGGTGTCGGGAAAAGTACTCTGCTGCTGCAGATTGCTGCAATGATCACAGAAGAGTGCAATGATAGCGAAGCATCTCCAGTTGTGTACGTCTCTGGTGAAGAGAGTGTTGAGCAAATAGGCAATAGGGCGGATCGCCTTGGCATTACAGAAGACATTTATTTATATTCAAGTAATGATATTGAGGATATATTGAAAAAAGTTCAGTATCTCGCTCCTCGGGCTCTGGTTATTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTGCTGCGATTTGCAAAGACAACAAACATCCCCGTTCTTTTGATTGGCCATGTGACTAAATCTGGAGACATAGCTGGACCTCGTGTCTTGGAGCATATTGTAGACGTTGTTCTGTATATGGAAGGGGAGAAGTACTCCACCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCGAGTGAAATGTTTCTCAGTGAGCAACATTTAGATTCGGAAATATTAGCGGGGCTAGCTGTTGCTGTGATAATGGATGGCTCCCGAACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGCTCAACGGGTTCAAGGCAAGTTAATGGGATCCATGCAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGCCTACAAGAAAATGCTGTGTTTTTGAACGTTGTTAGTGGGTTGACACTTACTGAGACTGCAGGAGATCTTGCAATAGCAGCTGCGATTTGTAGCAGTTTCTTGGAGGTCCCAATACCAAATGAAATTGCATTCATCGGTGAAATTGGACTTGGTGGCGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTATACACAGTGGCCAAATTGGGTTACAGAATGTGCATAGTGCCAAAAACAGCTGAAAAAACTTTAGGAAATGAAGGTCTAGAAAAGATGACACTTGTGGGTTGCAGGAATCTGAAAGAAGTTATTTACACAGTCTTTCCCAAGGTCACAGGTTCAAGCCATGGAAACAGCCACTAA 1683 0.4433 MASVPFFSRFHLLPLNQSSFPPNSTFHLHLHNPQHPFTANANPSSSDHKAQDFATNPVQGIGGAPKKKKAKEKVHWVCSNCGYSAGQWWGVCRSCGEAGTMKEFHETKGSDNKVSGFAVMDGAVGSWLPHQEETQLRPLRLSEVNRGLDQLHWRIPLNGPCGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAMITEECNDSEASPVVYVSGEESVEQIGNRADRLGITEDIYLYSSNDIEDILKKVQYLAPRALVIDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSTHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIHANRADMIISVLIKQAGLRLQENAVFLNVVSGLTLTETAGDLAIAAAICSSFLEVPIPNEIAFIGEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKTAEKTLGNEGLEKMTLVGCRNLKEVIYTVFPKVTGSSHGNSH 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00475 560 Pfam Rubredoxin metal binding domain 76 103 IPR041166 -
Aip09g00475 560 Pfam Subunit ChlI of Mg-chelatase 429 519 - -
Aip09g00475 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 358 IPR027417 -
Aip09g00475 560 PANTHER DNA REPAIR PROTEIN RADA 66 549 - -
Aip09g00475 560 SUPERFAMILY Ribosomal protein S5 domain 2-like 344 548 IPR020568 -
Aip09g00475 560 Gene3D - 383 556 IPR014721 -
Aip09g00475 560 TIGRFAM sms: DNA repair protein RadA 70 531 IPR004504 GO:0003684|GO:0005524|GO:0006281
Aip09g00475 560 ProSiteProfiles RecA family profile 1. 151 307 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aip09g00475 560 PANTHER DNA REPAIR-LIKE PROTEINRADA 66 549 - -
Aip09g00475 560 SMART AAA_5 175 333 IPR003593 -
Aip09g00475 560 Gene3D - 164 364 IPR027417 -
Aip09g00475 560 Pfam AAA domain 168 311 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 412 435 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 78 102 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 263 287 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 167 195 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 302 330 - -
Aip09g00475 560 PRINTS DNA repair protein radA signature 337 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00475 Aip-Chr9 5016677 5021612 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00475 K04485 - gmx:100794165 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00475 09 5016677 5021612 Aip09g00475 09 5016677 5021612 ECH
Aip08g00206 08 1428072 1435229 Aip09g00475 09 5016677 5021612 PCT