Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00268 ATGCAGCATAACATGCTTATGACAGCTACAAAAGCAAAAGATTGTACTACTTCTACATTACTTGAGCTTTTCACTGAGATGAAGAATCAAACCAACACAGATTCCATCAATTTTCCACCACCAAGATCTCCATCATCCCAATTCTCCTCTGAATGCTGGTTTGATGATGCATGCATCCTTGACATGGACTACTTTGTCAAGACCCTTTCCGGAATCAAAGCGAAAGGCGTCCGGGCCGACTTGATTGGTTCCATAATCACACATTACGCCTCCAAATGGCTACCTGACCTCTCTGCAGGTGACTTGGCCGAAAAAGGCCTTACGCAATTCGAGGAATCACCAGAGAGCGTCACAGCTTCTTGGATGAAGAAGAGGTTCTTTGTGGAAACATTGGTGGGAGTTCTGCCTCCTGAGAAGGATGCAATCCCCTGCAACTTCCTCCTTCGCCTTCTCCGAACGGCGAACATGGTTGGTGTTGAGGCTAGTTATAGACACGAGCTTGAGAGGCGGATTTCATGGCAGCTTGACCAAGCTTCATTGAGAGAGCTTGTGATTCCATCATTCAGCCACACTTGTGGAACTCTTTTGGATGTTGAGCTTGTTATTAGGCTTGTTAAGAGGTTTGTGGGTTTGGATAGTGAGGGAGCCAAGAGTGGTGCTGCTCTTGTTAAGGTGGCCAAGTTGGTTGACTGCTACCTCGCCGAGGCTGCTGTCGATGCGAATTTGAGCTTGTCCGAGTTTGTCACTCTTGCAGGAGCTCTTCCAAGCCATGCTAGAGCAACAGATGATGGATTGTACAGAGCCATTGACACTTATCTAAAAGCACATCCAAGTGTGTCCAAGGAAGATAGGAAGGGTTTGTGTAGGCTTATTGATAGCCGGAAACTCACGCCGGAGGCGTCGCTTCACGCAGCTCAAAATGAAAGGTTCCCTGTGAGAGCTGTGATTCAGGTGCTCCTGTCCGAGCAAACTAAATTGAACCGGAATCTAGATTGGAGTGGCTCCTTGATCAGCAGCACTAGGAGCCCGAATGGCGTGCTAGACGCATGTCTTTCGAAGCGCGAGATGAATGCTCAACACATGGAGATAAGGAAGCTCAAGGAAGAGCTGTATAGGGTGCAAAGCCAGTGCAATGCAATGCAGGTACAAATGGAGAGGATGGTTGAAAAGAAGAAAGGGTTCTTCAAGTGGATGAGATTTGGAGTGATGCCTAATGCATTTGGAAGCAAAGGGTTTGGAGGAGTGGAGAAAATTGATGAAGTTGTTGAAGGAGAAGTTGGATTTGGAAGACAAACACCAATGGACATGAAAACCAAGTTGGTCAAAGGTAGGACTCCTCACAAGTGGAGGAAATCCTTGTCTTGA 1365 0.4703 MQHNMLMTATKAKDCTTSTLLELFTEMKNQTNTDSINFPPPRSPSSQFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDLAEKGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEASYRHELERRISWQLDQASLRELVIPSFSHTCGTLLDVELVIRLVKRFVGLDSEGAKSGAALVKVAKLVDCYLAEAAVDANLSLSEFVTLAGALPSHARATDDGLYRAIDTYLKAHPSVSKEDRKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQTKLNRNLDWSGSLISSTRSPNGVLDACLSKREMNAQHMEIRKLKEELYRVQSQCNAMQVQMERMVEKKKGFFKWMRFGVMPNAFGSKGFGGVEKIDEVVEGEVGFGRQTPMDMKTKLVKGRTPHKWRKSLS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00268 454 ProSiteProfiles NPH3 domain profile. 51 325 IPR027356 -
Aip09g00268 454 Coils Coil 363 383 - -
Aip09g00268 454 Pfam NPH3 family 52 301 IPR027356 -
Aip09g00268 454 PANTHER OS12G0117600 PROTEIN 3 454 IPR043454 -
Aip09g00268 454 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 3 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00268 Aip-Chr9 2451105 2454146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00268 50 346 EF-hand Containing Proteins AT3G44820 34.985 7.79e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00268 - - gmx:100777676 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00268 09 2451105 2454146 Aip09g00268 09 2451105 2454146 ECH
Aip08g00115 08 682743 685451 Aip09g00268 09 2451105 2454146 PCT