Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00191 ATGTCTTCTCTTAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAGGAGACTGTTCACAAGCTTGAACAGGAGTCTGGATTTTTCTTCAATATGAAGTACTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAAAAGTACCTTTCTGGTTTCACTAAGGTAGATGATAATAGATATTCTATGAAGATATTTTTTGAGATAAGGAAACAGAAGTATCTTGAGGCATTGGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTAAAGGATTTGAAAGTGTTTGCTACTTTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAATGAGCAATTGTCTAAGTATGGTGATACAAAATCTGCTAGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCGAATCCTTTGTTTCGTGATAAGTTGCAATTTCCCAACCTTAAGAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCTTGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAATCCGCTATTAGGGTCCTTACCAAAGGCCGGAGCATTTCCTCCTCTCGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCAGTGCCGACGCCCCTGGCTGGGTGGATGTCAAATCCTACCACTGTGGCACATCCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCAATCCCTGCTGCTTTGAAGCATCCAAGGACTCCTCCAACTAATCCCTCTGTTGATTACCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACTAGACCAATGGGAATATCCGAGGAGGTAAATCTACCCGTCAATGTGTTGTCGGCAACATTCCCTGGTCATGGTCACGGTCACGGTCATAGTCAAGCTTTTACGGCACCTGATGACTTGCCGAAGACTGTCGTGCGAACTTTGAATCAGGGTTCATCACCTATGAGCATGGACTTCCATCCTGTGCAACAATCTTTACTTCTTGTTGGCACTAATGTTGGGGACATCGCTTTGTGGGAGGTGGGGTCTAGGGAGCGGTTGGTCTTGAGGAATTTCAAAGTTTGGGACCTTAGTGCATGTTCAATGCCATTTCAGGCTGCACTCGTCAAAGATCCTGGTGTTTCTGTCAACCGAGTGATTTGGAGTCCTGATGGTGCTTTATTCGGAGTTGCTTATTCAAGACACATTGTTCAAATATACTCTTATAATGGCGGGGATGATGTGAGGCAGCACCTTGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTTGCATTTTCGCATCCAAATAAGCAACTATGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTACGGGTACTAAGCAGTATACTTTTGAGGGCCATGAAGCTCCAGTATATTCTGTATGCCCACATTATAAAGAAAACATTCAGTTTATTTTTTCAACGGCATTAGATGGAAAGATAAAAGCATGGCTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCACCTGGTCGTTGGTGCACCACCATGGCTTATAGTGCTGATGGAACAAGGCTCTTTTCGTGCGGGACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTCAAAAGGACTTATCAAGGATTCCGTAAGCGGTCTTTGGGTGTTGTGCAATTTGATACCACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATAAAATTCTGGGACATGGACAATGTTCAGCCTCTGCAAGCCATCGATGCTGATGGGGGTCTTCCTGCAAGCCCACGTATCCGATTCAACAAGGATGGAACACTTCTAGCCGTCTCTGCGAATGAGAATGGAATCAAAATTTTAGCCAATGCAGATGGTATGCGTTTGTTGCGCACATTAGAGAATTCTTTATATGATGCATCACGAACATCAGAAGCCATGGCAAAGCCTACCATAAATCCAATTTCTGCTGCTGCCGCCGCAGCGACTAGTGCCGCACTTGCGGAGAGGGCCTCTTCTGTAGTAGCAATTCCCGGAATGAATGGGGATGCACGGAACTTAGGTGATGTTAAGCCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAAATATGGAAGCTCACTGAAATAAATGAACCGTCTCAGTGTAGATCCTTGAAGTTACCAGACAATGTGAGAGTACCAAAGATATCAAGGTTGATATATACAAACTCTGGTAATGCTGTTCTTGCATTAGCATCAAATGCTATTCACCTTCTCTGGAAATGGCAGCGAAATGACCGTAACTCATCTGGCAAGGCCACTGCCAGCATGCAACCTCAATTGTGGCAACCATCAAGTGGCATTCTGATGACTAATGACATTGCCGATAGTAGTCCCGAAGATGCTGTTCCATGCTTTGCTCTGTCCAAAAATGATTCTTATGTAATGTCCGCCTCAGGAGGGAAGATATCCCTTTTCAATATGATGACTTTTAAGACAATGACGACATTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTTCATCCTCAGGATAACAACATTATTGCCATAGGCATGGATGATTCCTCCATTCAAATATATAATGTCCGCGTGGACGAGGTTAAAAGTAAACTCAAGGGTCATACTAAAAGAATAACTGGTCTTGCTTTCTCACACGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCCCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAAAGTAGATTCTTGCAGCTTCCTCCCGGGAGGACTCCGTCAGCGCAGGCAGATACGCGTGTACAGTTTCATCAGGATCAGATACATTTCTTGGTTGTACATGAAACTCAGCTAGCAATTTATGAAGCAACAAAGCTAGAATGTTTGAAGCAGTGGTTCCCGCGAGATTCAGCTGCACCAATATCGCATGCGACTTTCTCGTGTGATAGTCAGCTGATATACGCCAGCTTTTTAGATGCAACAGTGTGTGTATTTAGTGCTTCAAACCTCAGATTACGATGTCGAATCAATCCGTCTGCTTATCTTTCAGGAAGCGTCAGTTCCAACGTACAACCGCTTGTAATTGCGGCGCATCCGCAAGAACCGAATCAGTTTGCAATAGGGCTGTCAGACGGCGGAGTTCACGTGTTTGAGCCGCTTGAATCGGAAGGCAAGTGGGGTGTGCCTCCACCAGTTGAGAATGGTTCAGCAAGCAATGTGGCAGCTCCATCAGTTGGAGGACCCTCTTCAGATCAACCTCAAAGATGA 3417 0.4416 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGAFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISEEVNLPVNVLSATFPGHGHGHGHSQAFTAPDDLPKTVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVLRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYNGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQPLQAIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGMRLLRTLENSLYDASRTSEAMAKPTINPISAAAAAATSAALAERASSVVAIPGMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPDNVRVPKISRLIYTNSGNAVLALASNAIHLLWKWQRNDRNSSGKATASMQPQLWQPSSGILMTNDIADSSPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPSAQADTRVQFHQDQIHFLVVHETQLAIYEATKLECLKQWFPRDSAAPISHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLSGSVSSNVQPLVIAAHPQEPNQFAIGLSDGGVHVFEPLESEGKWGVPPPVENGSASNVAAPSVGGPSSDQPQR 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00191 1138 Gene3D - 333 548 IPR015943 GO:0005515
Aip09g00191 1138 SUPERFAMILY WD40 repeat-like 360 670 IPR036322 GO:0005515
Aip09g00191 1138 SMART Lish 4 36 IPR006594 GO:0005515
Aip09g00191 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 965 IPR001680 GO:0005515
Aip09g00191 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 504 IPR001680 GO:0005515
Aip09g00191 1138 MobiDBLite consensus disorder prediction 1120 1138 - -
Aip09g00191 1138 Gene3D - 779 1109 IPR015943 GO:0005515
Aip09g00191 1138 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aip09g00191 1138 SMART WD40_4 348 387 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 1008 1049 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 542 585 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 454 495 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 588 628 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 834 871 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 917 956 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 498 539 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 1058 1101 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 409 448 IPR001680 GO:0005515
Aip09g00191 1138 SMART WD40_4 874 914 IPR001680 GO:0005515
Aip09g00191 1138 Pfam WD domain, G-beta repeat 461 495 IPR001680 GO:0005515
Aip09g00191 1138 Pfam WD domain, G-beta repeat 923 956 IPR001680 GO:0005515
Aip09g00191 1138 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aip09g00191 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 637 IPR001680 GO:0005515
Aip09g00191 1138 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 956 - -
Aip09g00191 1138 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Aip09g00191 1138 MobiDBLite consensus disorder prediction 1104 1138 - -
Aip09g00191 1138 Gene3D - 549 699 IPR015943 GO:0005515
Aip09g00191 1138 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1138 - -
Aip09g00191 1138 SMART ctlh 34 92 IPR006595 -
Aip09g00191 1138 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1138 IPR027728 GO:0006355
Aip09g00191 1138 SUPERFAMILY WD40 repeat-like 842 1102 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00191 Aip-Chr9 1663723 1671603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00191 459 672 Miscellaneous Gene Families AT5G08390 23.853 2.52e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00191 - - gmx:100795759 2144.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00191 09 1663723 1671603 Aip08g00051 08 319871 327661 ECH
Aip09g00191 09 1663723 1671603 Aip09g00191 09 1663723 1671603 ECH