Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03235 ATGGCAGAGGAAGCTCCAAAGACATCACCATCACCACCACAAGAGGAAGCAGTGTTGCATGTGGAACAAGTTATGGTCACTGACGTTGACGAGAAAGAACACTCCACCAACGCCATTGTTGAGAATGAGAAGGAGACAGAGAAAGAGCATGTTGTTGAAGATGAAAAGAAAGAAGAAGAAGCTTCTGTAGCTGCAAATGAAAATAATGCTGGCGAGGATTCAAAAGCATGTGATGATGAGAAGGTTCCAGAATCAGGTTCGTTCAAGGAAGAGAGCACGAAGGTTTCTGAACTTGCTGAGACTGAGAAGAAGGCACTTCAAGAGCTCAAAACCCTAATCCAAACTGCACTCAACAATCGTGAATTCTCTGCACCAAAAGAAGAAAAGCCTGCAGTTGAATCTGATGTAGCAGAAGAAAAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGCAGAGGAAAACCACCTAATTGAGGAGAACAAGGATTCATCAGAAGAAAAAGAAGCTGCAGCAGAAGTGAAAGAAGCAACAACAACAGCAGAAGCTTTATCTTCTTCTGTGGATGATGACGAAGCAAAAACCGTTGAGGCCATTGAAGAAACCGTGGTGGCAGTTTCTTCCACAACTGAAGCTGAAGAACTAGCTCCAAAGAAGGAAGAAGAGTGTTCGCCATTGTTGGCGCCAGAAGAAGTCTCAATCTGGGGAGTGCCGCTCCTCGCCGACGAAAGAACAGACGTGATCCTCTTGAAGTTCCTCCGCGCACGTGATTTCAGGGTAAAAGAAGCGTTCACCATGATCAGGAACACGATCAAGTGGCGAAAGGAGTTCAAGATCGACGAATTACTGGAACAAGAAGAAGAAGATAATATTTTCATTAATACAATGGATTTTGAAAAGGCGGTATACATGCACGGATACGACAAAGAAGGGCACCCCGTGTGTTACAACATCTATGGCGAGTTCCAGAACAAGGAGCTGTATAAGAAGGCATTCTCTGATGAGGAGAAGAGGGAGAGGTTCTTGAAATGGAGGATTAGGTTCCTTGAGAGGAGTATTAGGAAGCTTGATTTCTGGCCTGGTGGGATATCCACCATTGTTCAGGTTAATGATCTCAAGAATTCACCTGGTCCTGCTAAGTGGGAACTTAGACAAGCAACCAAACAGGCCCTTCAATTGCTTCAAGATAATTACCCTGAATTTGTTGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGTCCATTTCTGACACAGAGAACAAAGAGCAAGTTTGTGTTTGCTGGTCCTTCCAAAACAGCCGAGACCCTTCTAAGGTACATTGCAGCTGAGCAACTTTCTGTGAAGTATGGAGGACTAAGTAAAGATGGGGAATTCGGAAATAACGATGCTGTTACCGAGATAACTGTGAGACCAGCTGCTAAACATTCTGTGGAGTTTCCAGTTACTGAGAATTGTGTATTGTCTTGGGAGATGAGAGTAATAGGGTGGGATATAAGTTATGGTGCTGAATTTGTGCCAAACTCAGAAGGAAGCTACACAGTAATAATTCAAAAAGCTAGAAAGGTTGCACCATCAGAAGAACCTGTTCTTTGCAACAGTTTCAAGATTGGTGAACCTGGCAAAGTGGTTCTCACCATTGAAAACCAAAGCTCCAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAACCTGAATGA 1722 0.4361 MAEEAPKTSPSPPQEEAVLHVEQVMVTDVDEKEHSTNAIVENEKETEKEHVVEDEKKEEEASVAANENNAGEDSKACDDEKVPESGSFKEESTKVSELAETEKKALQELKTLIQTALNNREFSAPKEEKPAVESDVAEEKKKEEEEEEEEAEENHLIEENKDSSEEKEAAAEVKEATTTAEALSSSVDDDEAKTVEAIEETVVAVSSTTEAEELAPKKEEECSPLLAPEEVSIWGVPLLADERTDVILLKFLRARDFRVKEAFTMIRNTIKWRKEFKIDELLEQEEEDNIFINTMDFEKAVYMHGYDKEGHPVCYNIYGEFQNKELYKKAFSDEEKRERFLKWRIRFLERSIRKLDFWPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKTAETLLRYIAAEQLSVKYGGLSKDGEFGNNDAVTEITVRPAAKHSVEFPVTENCVLSWEMRVIGWDISYGAEFVPNSEGSYTVIIQKARKVAPSEEPVLCNSFKIGEPGKVVLTIENQSSKKKKLLYRLKTKPE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03235 573 Coils Coil 129 166 - -
Aip08g03235 573 PANTHER PATELLIN-1 1 572 IPR044834 GO:0008289
Aip08g03235 573 SUPERFAMILY CRAL/TRIO domain 300 462 IPR036865 -
Aip08g03235 573 MobiDBLite consensus disorder prediction 30 99 - -
Aip08g03235 573 MobiDBLite consensus disorder prediction 122 139 - -
Aip08g03235 573 Gene3D - 288 474 IPR036865 -
Aip08g03235 573 SMART sec14_4 294 462 IPR001251 -
Aip08g03235 573 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 470 568 IPR036598 -
Aip08g03235 573 SMART CRAL_TRIO_N_2 244 269 IPR011074 -
Aip08g03235 573 Coils Coil 99 119 - -
Aip08g03235 573 Gene3D GOLD domain 475 570 - -
Aip08g03235 573 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 303 465 IPR001251 -
Aip08g03235 573 PANTHER PATELLIN-3 PROTEIN 1 572 - -
Aip08g03235 573 SUPERFAMILY CRAL/TRIO N-terminal domain 95 284 IPR036273 -
Aip08g03235 573 MobiDBLite consensus disorder prediction 140 155 - -
Aip08g03235 573 MobiDBLite consensus disorder prediction 30 63 - -
Aip08g03235 573 MobiDBLite consensus disorder prediction 72 99 - -
Aip08g03235 573 Gene3D - 210 275 - -
Aip08g03235 573 ProSiteProfiles GOLD domain profile. 469 570 IPR009038 -
Aip08g03235 573 Pfam CRAL/TRIO domain 299 459 IPR001251 -
Aip08g03235 573 CDD SEC14 296 460 IPR001251 -
Aip08g03235 573 MobiDBLite consensus disorder prediction 116 193 - -
Aip08g03235 573 MobiDBLite consensus disorder prediction 156 174 - -
Aip08g03235 573 Pfam CRAL/TRIO, N-terminal domain 221 268 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03235 Aip-Chr8 123197752 123201378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03235 248 439 Acyl Lipid Metabolism Gene Families AT5G47730 28.571 1.66e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03235 - - gmx:100805585 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03235 08 123197752 123201378 Aip08g03235 08 123197752 123201378 ECH
Aip03g03376 03 110619766 110622603 Aip08g03235 08 123197752 123201378 PCT