Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01539 ATGAGGATGATTTCCAAAACACCTTTAGTGTTCATTATCTCTCTTCTATTGCTGGTTAATGTCCATGGTCGCTATCTACTTCCAAATCATGCTTCTGAAGAATTAGTTTCAGATGGAGTTGAAGAAGTTGATGATCATAGTGTTCACCCCAACAGAACTTCTTATTTGCTACTCAAAGGAATTGATGAAGATCATAACTGTGACCAAATTTACGGATTTCTGCCATGCACAAACAACATATTTGGGAATCTCTTTCTAATTTTGGTGTATGGATACATGCTTTTTCATGGAGAATCGTTTCTGAGTAGAGGGACTCAACGAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTACTGCTTTTAACATCATTCCTGCTCTTCCAGAGTCCTTGATTCTTCTTGTTCCAGTACTACTTGTGAACAATGGAAAGATAGCAGAAGAATATGCTATGATTGGAATTGGATCATTGGCTGGATCATCAATCTTGCTTCTGACTATAGTTTGGGGAACATGTGTTATCACTGGCAGCAAAGATTTTGAGCACAGTGAAGGATCTAACTCATCATCATCATCATCATCATCATCACCATCATCACCATCACCTACAACTCTCAAACCTTTATTCACTAGTCATGGCATTACTATAGATTTGGAGACAAAACAAGCAGCAAGCAATATGTTAGGTTCAACAATTTTATTACAATTATCTTATGGGACAACAACTGTGCAATCGATAATTGGTCTCATCTTTGCTTCCCTTCTTCTCTTCTTTTATTTTACTAAACAGGTTTTTGAACCTTGGCGACAGAAAAGAAGATTGGAATACTTGAAACATGATGATTTAATGTTAAGAATACTAAGTTTTGTAGAAAAGAATACTCTACAAAGGATACTCACCAAGAATGGGACTCCAAATGTGACTGCCATTAGAAGGTTGTACAGTGAAATAGATGAAGATAGGAGCAGTGGCATATCAGCTTCTGAACTAAGAGACCTATTGCTACGAAACAAAGTAACAGACACAAGTATCGACGAGGAGAAAGAAATAGAAGAGGTATTGAAATTTTTTGAACATGGTCATGATCAAATGATAACCAAGGATGAGTTTGTTGTTGGCTTTGCAAAGTGGCTTGATCAAACAAAGCATGATTTGGATAAAGAGTATCTTTCAAGGAAATCAATGAAGGACTTATATGAGGTTTTTGGGCCATGGACTAAAAACAAAAGAAAAGAAAGAGAAGGGAAGAAACGAGTCATATCTGAAATATTAAGGCATGTTCAGAATGATATGGTTGGAAGCCTTCTCAGAAATGATGGAAAACCTGATGAGATAGCCATCAAAAGGTTGTTCGAAAAAATTGACCGCAACAAAGACAACTGCGTCTCGCAATCTGAACTGAAAGAACTAATGATGAACATCACATTTGTTAAAGCATCAATGGAAGTGGAGAAAGCAGTTGCTTTAGTCATTGATGAACTTGACCATGACATAGACCAGATAATCAATGAGGAGGAATTTGTTGCTGTGTTTGAGAAATCACTTAACAAAATTTCAAGTCATGCTCCTTTTTCTGATCCTGACTCTGAAGAAGATATATATCAAGCATGGGAAGAGGCAGGCATGGTGGTGGAAAATAAAGAAAGCAAAGCAATAGTAGATAAATCAATATGGGGAAGGTTGATGGCCACAACAAATGTGGTGCTAGGAATTGTTATTATATGCATTGTGGCACAACCGCTTATGGAAAGTGTCAGAAAATTCTCCAACAGTTTAGGAGTTCATGCTGCCTTTGTCTCATTTGTTCTAGTCCCCTTGGCCATAAATGCAAGGGAAGCAACTACAGCAATTAAAAAAACAAGCTATAAGAATTCTAGGACTATTTCTCTTGCTATTTCTGAGATATATGGAGGGGTTCTCATGAATAACATTGTTGGATTTTTTGCTATCTCCATTATGATCTATGTCCGACAAGTCACTTATGTATTCCCATCAGAATTGATGGTCGCTACACTTGTTTGTCAGATTATAAGCGTTATTTTAGGATTGAGTAATGGAGAAAAAACAGTGTTTCACTTTATACTACATGCAATGGGTCAAAGAgATGAGAAGCTCCGACCATAA 2127 0.37 MRMISKTPLVFIISLLLLVNVHGRYLLPNHASEELVSDGVEEVDDHSVHPNRTSYLLLKGIDEDHNCDQIYGFLPCTNNIFGNLFLILVYGYMLFHGESFLSRGTQRIFKILGPGIFGATAFNIIPALPESLILLVPVLLVNNGKIAEEYAMIGIGSLAGSSILLLTIVWGTCVITGSKDFEHSEGSNSSSSSSSSSPSSPSPTTLKPLFTSHGITIDLETKQAASNMLGSTILLQLSYGTTTVQSIIGLIFASLLLFFYFTKQVFEPWRQKRRLEYLKHDDLMLRILSFVEKNTLQRILTKNGTPNVTAIRRLYSEIDEDRSSGISASELRDLLLRNKVTDTSIDEEKEIEEVLKFFEHGHDQMITKDEFVVGFAKWLDQTKHDLDKEYLSRKSMKDLYEVFGPWTKNKRKEREGKKRVISEILRHVQNDMVGSLLRNDGKPDEIAIKRLFEKIDRNKDNCVSQSELKELMMNITFVKASMEVEKAVALVIDELDHDIDQIINEEEFVAVFEKSLNKISSHAPFSDPDSEEDIYQAWEEAGMVVENKESKAIVDKSIWGRLMATTNVVLGIVIICIVAQPLMESVRKFSNSLGVHAAFVSFVLVPLAINAREATTAIKKTSYKNSRTISLAISEIYGGVLMNNIVGFFAISIMIYVRQVTYVFPSELMVATLVCQIISVILGLSNGEKTVFHFILHAMGQRDEKLRP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01539 708 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Aip08g01539 708 Gene3D - 376 520 - -
Aip08g01539 708 SMART efh_1 310 338 IPR002048 GO:0005509
Aip08g01539 708 SMART efh_1 447 475 IPR002048 GO:0005509
Aip08g01539 708 SMART efh_1 350 378 IPR002048 GO:0005509
Aip08g01539 708 SMART efh_1 487 515 IPR002048 GO:0005509
Aip08g01539 708 Pfam EF-hand domain pair 447 512 IPR002048 GO:0005509
Aip08g01539 708 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 557 682 - -
Aip08g01539 708 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 8 392 - -
Aip08g01539 708 SUPERFAMILY EF-hand 308 512 IPR011992 -
Aip08g01539 708 Gene3D - 263 375 - -
Aip08g01539 708 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 399 520 - -
Aip08g01539 708 Pfam Sodium/calcium exchanger protein 568 682 IPR004837 GO:0016021|GO:0055085
Aip08g01539 708 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 557 682 - -
Aip08g01539 708 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 392 - -
Aip08g01539 708 MobiDBLite consensus disorder prediction 185 204 - -
Aip08g01539 708 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 399 520 - -
Aip08g01539 708 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01539 Aip-Chr8 26491943 26500170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01539 399 679 EF-hand Containing Proteins AT1G53210 35.034 4.16e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01539 - - aip:107612772 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00981 08 11477170 11479811 Aip08g01539 08 26491943 26500170 ECH
Aip08g01539 08 26491943 26500170 Aip08g01539 08 26491943 26500170 ECH