Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00981 ATGAGACACAAGTTTTCATTCATTTACCTTGTCATATTCTTGCTCATATTACCACATTCTAATTATGGTAGACCTATCACAAAAGAGGCACCTCTATTGATGGTTTCTGATGGAATCCATGATCATAGTAGTGAGCCTTCTCTTATTTATGTGAACAAGCTAGGTTCTTCAGATACATGCACAGAAGCTTATGGATTTTTGCCCTGTACAAATAATGCTCTAGGTAATGTGTTCCTCATGTTGGTGTATGGCTACTTTATGTTCTTGGCAGCAAAGTCATTATCAGCTGGCAGTGAGATTTTGCTTCAAATTCTTGGACCTGGCATCATTGGTGGACTATTCCTCCCTCTCTTGAGTTCTCTTCCTGATGCAACCATCATTCTTGCATCTACATTATCTGGGAACAAAGAAACAGCTCAAAGTCAGGTCTCTGTGGGAATGGGACTACTTGCTGGATCAACTGTAATGCTTCTAACTATTCTATGGGGTTCCTGTCTTATAGTTGGAAGGTGTGACCTTGAAAATTCAGTAGCAATTGATCAAAAGGATACAAAAGGCTTTGACTTAGCTGGATCTGGTGCAAGCACTGATATTTGGACAAGCTATGCTGCAATGTTGATGATAATATCTTGCATTCCACTTGTTATTGTGCAATTACCCCAAATTTTTCATGGAGCTACTCCAAGTCGCGCAGCCATTCTATTTTCGCTCATTGTCTCCATTTGTTTATTGGTTGTCTATACCATTTATCAGGTTTGTCAGCCAAGGATTCAGAGGAGAAGACTTGCATATGCCAAGTACAAGAACATAATGTCAGGATTTCTAGAACAATTGAAAACACAAACAAGAGGCCGTTTCCTCAAAGACAATGGTGAACCTCACATTGAGGTTATACAAAAGTTGTTTGACTCACTCAAGAATTCTGAAGGGTACATAACAGCCAAAGATTTAAGAGCTTTAATCATAGGAATGCACTTTGAGGAGGAAGATATGGACATTGATGAAGCTGTTGCAAGCATCATGTTGGATTTTGACAAGTCACATGACTCTAGAATTGACATGGAAGAGTTTGTGAGAGGAATAACAAGATGGCTTAGCAAAGCTACGCGATCCGCCACACACGACAATGATCACAGTCCCACAACACCTAAGATTCTAAATGATTTCCATCAGAGGATGAAAGCAGAACAAGATGTATGGAGTGATCACAGTGATGAGGCTGTGGAGAGTGTAAAGAATCCAAGATGGAATACTTTCAAAGCAGTGTTGATGTTGCTTCTAGGAACTGCTGTGGCTGGTGTATTTGCTGATCCTCTTGTTGATTCAGTGGACAACTTCTCAGCAGCCACTAGTATCCCTTCTTTCTTTGTTTCCTTCATCATCCTTCCTTTCGCCAGCTCCAGCGAAATTGTGTCGGCTCTTATTTTCGCCAGCCGGAAGAAGATCAGAACCGCCTCACTCACATATTCTGAGATATATGGATCAGTGACAATGAGCAATCTCCTTTCATTATCAGTTTTCTTGGGTTTGGTTTACATTCAAAACCTGACATGGAGTTTCTCAGCTGAGGTTTTGATCATTCTCATTGTGTGCATAACAATGGGACTTGTTGCAAGCTTTCACACTACCTTGCCTCTATGGCTATGCTTCCCTGCCTTTGCACTTTATCCATTCTCTCTGCTTTTCGTCTATATTCTTAATTATGTTGTTGGAATACCTTAA 1722 0.4042 MRHKFSFIYLVIFLLILPHSNYGRPITKEAPLLMVSDGIHDHSSEPSLIYVNKLGSSDTCTEAYGFLPCTNNALGNVFLMLVYGYFMFLAAKSLSAGSEILLQILGPGIIGGLFLPLLSSLPDATIILASTLSGNKETAQSQVSVGMGLLAGSTVMLLTILWGSCLIVGRCDLENSVAIDQKDTKGFDLAGSGASTDIWTSYAAMLMIISCIPLVIVQLPQIFHGATPSRAAILFSLIVSICLLVVYTIYQVCQPRIQRRRLAYAKYKNIMSGFLEQLKTQTRGRFLKDNGEPHIEVIQKLFDSLKNSEGYITAKDLRALIIGMHFEEEDMDIDEAVASIMLDFDKSHDSRIDMEEFVRGITRWLSKATRSATHDNDHSPTTPKILNDFHQRMKAEQDVWSDHSDEAVESVKNPRWNTFKAVLMLLLGTAVAGVFADPLVDSVDNFSAATSIPSFFVSFIILPFASSSEIVSALIFASRKKIRTASLTYSEIYGSVTMSNLLSLSVFLGLVYIQNLTWSFSAEVLIILIVCITMGLVASFHTTLPLWLCFPAFALYPFSLLFVYILNYVVGIP 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00981 573 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 567 IPR004713 GO:0006812|GO:0008324|GO:0016021
Aip08g00981 573 PANTHER ION BINDING PROTEIN, PUTATIVE-RELATED 3 567 - -
Aip08g00981 573 Gene3D - 289 392 - -
Aip08g00981 573 SUPERFAMILY EF-hand 292 365 IPR011992 -
Aip08g00981 573 Gene3D - 105 264 IPR044880 -
Aip08g00981 573 Pfam Sodium/calcium exchanger protein 79 252 IPR004837 GO:0016021|GO:0055085
Aip08g00981 573 Pfam Sodium/calcium exchanger protein 421 564 IPR004837 GO:0016021|GO:0055085
Aip08g00981 573 CDD EFh 300 362 IPR002048 GO:0005509
Aip08g00981 573 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00981 Aip-Chr8 11477170 11479811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00981 34 571 EF-hand Containing Proteins AT1G53210 56.261 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00981 - - qsu:112040079 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00981 08 11477170 11479811 Aip08g01539 08 26491943 26500170 ECH
Aip08g00981 08 11477170 11479811 Aip08g00981 08 11477170 11479811 ECH