Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01116 ATGGAGTCAATACTAGCTCGTGCACTAGAGTACACGCTCAAGTATTGGCTCAAATCCTTCTCCAGAGAGCAGTTCAAGCTCCAAGGCCGCACTCTAAGTCTCTCCAATTTAGATATCGATGGTGATGCCTTGCATTCCAGCTTGGCCTTGCCACCTGCGCTTAACGTTTCCACAGCTAAAGTTGCCAAATTGGACATCATGCTTCCTTCCGTGAGTAATGTGCAAGTAGAGCCGATCATTGTGCAAATTGATCGGCTTGATCTAGTTCTGGAGGAGAATTCTGATTTTGATGCATCTGTTAGTAGTACCAACAGTGCCACTTCATCGGCTGCCACCTCGAAGGGTAGTGGTTATGGTTTCGCTGATAAGATTTCTGATGGCATGACTATACAAATTCACACAGTTAATCTATTACTTGAAACTCGTGGTGGTGGGGGCGCGCGTCGAAAAGTGGGAGCAACATGGGCACCACCAATGGCATCTATCACAATACATAACCTTTTGCTGTATACCACAAATGAGAGCTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTAACAAGAAATATATATATGTCTTCAAAAAACTAGAATGGGAATCTTTGTCTATTGATCTTTTGCCTCATCCTGACATGTTCGCGGATGCTGCATTAGGCTTCTCTGAAGAGGGATCAAACCTGAGAGATGATGATGGTGCAAAGCGAGTATTCTTTGGAGGAGAGCGTTTTATTGAAGGAATATCAGGAGAAGCATATATAACAGTTCAGAGAACTGACTTGAACAGTCCACTTGGGCTTGAGGTTCAGTTGCACATCAATGAAGCTGTTTGCCCTGCACTAAGTGAACCTGGGCTACGCGCACTTCTCCGCTTTATGACAGGATTATATGTCTGTCTAAACAGGGGCAATGTTGATTTAAAGACTCAGCAGCAGCGATCAACTGAAGCTGCTGGGCGTTCTCTGGTCTCGATCGTTGTAGATCATATATTTCTTTGCATTAAAGATACTGAATTCCAGCTTGAGCTTTTGCTGCAGTCCCTCTTTTTCTCTCGGGCCAGTCTTTCTGAAGGAGAGAATGACAATAACTTGACCAAGATTACAATTGGTGGAATAATTTTAAGGGACATCTATTCATCTCCGCAGTGTACACTAGTGCAACCATCGATGCAAGCTGTCACAAAAGATGCTTTCCATGTGCCTGAATTTGCTAGAAGCTTTTGCCCTCCAATATACCCTCTAGGAGAACAGCAGTGGCAAGTGATTGAGGGAATCCCTCTAATATGCCTCCATGCACTTCAAGTCATGCCTTCACCACTTCCACCATCCTTTGCTTCTCAGACAGTTATTGATTGTCAGCCTCTTATGGTTCATCTTCAGGAGGAAACATGCCTGAGGATATCCTCATTCTTAGCTGATGATATTGTTGTCAGTCCTGGTGACATTCTACCGGACTTCTCAATAAAATCTTTTATTTTCAGTCTCAAGGGGCTTGACCTTACAGTTCCACTAGACAACATTGAAACTGATATTTCTAAAATCTATATGGATAATAATACAGTTCAGACCTCCTTCACTGGAGCAAGACTCCAAATTGAAAACCTTTCCTTTTCTGATTCACCCTCATTGAAACTAATAATGCTGAACCTGGAAAAGGATCCTGCTTGTTTTAGTCTTTGGGAAGGTCAACCGATCGATGCTAGCCAGAAGAAGTGGACTGCCAGAGCATCGCAGCTTACTTTGTCCCTGGAGGCATGTAATGACAAAATCAAACTTCAAAATTACCTTGGACAAACTGGAGGACTGTTGAGATGTGTTGATCTCAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAGTCCACTGTTACATATTCCTCCTTCAGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGGACAGTATCTATCCAACACTTCTGTTGAACAATTATTTTTTGTCCTGGACGTCTATGGTTATTTTGGGCGAGTTAGTGAGAAAATAGCTATGGTTGGGAAAAGGAAACAACTAGAGGACGTTAGAGACAAGTCTTTTAGTGGAAAGCTGATGGACAAGGTTCCCAGTGATACTGCTGTGAGTTTAACAGTAAAGGACCTCCAACTTAGATTTCTAGAGTCTTCGGTGAATGTTGAGGGAATGCCTTTAGTACAGTTTATCGGAGATGATCTATTCATTAATGCCGCCCATAAAACCCTTGGAGGGGCTATTGTTGTTTCATCTACTTTACGGTGGGAGAGTGTCCAGATAGATTGTGTGGATGCTGAGGGGCACTTACCATGTGAAAATGGATCATTCTTGAGTCCTAGCGAAAATGTTCCCTCACCAAGTGATAATGGATATCCTCATCTTAGAGCTGTTTTTTGGGTAGATAAGAATAAGAAACATCCAATGAATGGAAATGCTCATTCAATCCCTTTTCTAGACATCAGTATGGTTCATGTCATTCCACTAAATGAGCAAGATATGGAGTCTCATAGTTTAAATGTGTCAGCTTCTGTTTCTGGTGTTCGACTTGGTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGACCTGATGGAGGCCCTGGGACAGGCCTTTCAAAAGGGTTGGAAAACTTACAAAAAGGACCCTTATCAAAACTTTTTAAGACAACACCTCTCATGGTTGATAATTCAGAAGATGCTGAAAGTATGAGACAAGGGGAGGAAACCAGTTTTCCACACCTGAAGAAGCCAGATGACGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCTCTTGAAGGTGCAGATCAGATGGCTGAACAGTGGTGGTTCTCCAGTCTTGAGGTTGTAGACAGAGAAGAGAGGTGTTGGCACACAACTTTCCGTGGTTTACGAGTAAATGCAAAAAGTAGCCCAAAGAAGGTTCTGGATGGCAAAGCACAATTGCATCGGATAAAACAAAATCCAATAGAGCTTGTTACGGTAGGAATTGAAGGGCTACGAATATTAAAGCCTCATATCCAAAAGGGCAATCCTCCATCAATGTTAATTGCAAACGGGGATAAAGAAAATAGTAACACAACTGAGGGAGTTGGTCTTGAAGTTCGCTTGATATTATGTGAGGACAACACTGATGACATAGTGAATTGGGAAGTGGAAGACATAAAGTTCGCTGTTAAACAACCGATTGAAGCAGCAGTAACCAAGGATGAGCTTCAGCACCTCACTTTGCTGTGCAAATCTGAAATTGATTCGATTGGCCGAATCACTGCTGGAGTTTTGCGGCTGCTTAAGCTGGAAGGTTCTGTTGGTCAGGCTGTAATAGATCAACTTGGTAACCTAGGAAGCGAGGGCATTGACAAGATTTTCTCTTCTGAAAAGGTTACCAGAGATGGTAGTGTTGTTGGTAATAGAGGACATTCTCCCTTACCAAGCGGGGTTAATGAAGGACCACACAAAACCATGGAAGAGACATTAACTCAGCTTGAGGAAGTAGTTGTAGAGTCACAGGCTAAACTCAGTGAACTAATCACTCATGTTGGTACTTCGGACTCTTCTTCCACTCAGCACCGTACCATTGTCAAACTAAGTCAAAAGATTGAGACCATGCAGGGCCTATTGATGCAGTTGAGGAATCAACTTTAA 3663 0.4283 MESILARALEYTLKYWLKSFSREQFKLQGRTLSLSNLDIDGDALHSSLALPPALNVSTAKVAKLDIMLPSVSNVQVEPIIVQIDRLDLVLEENSDFDASVSSTNSATSSAATSKGSGYGFADKISDGMTIQIHTVNLLLETRGGGGARRKVGATWAPPMASITIHNLLLYTTNESWQVVNLKEAREFSSNKKYIYVFKKLEWESLSIDLLPHPDMFADAALGFSEEGSNLRDDDGAKRVFFGGERFIEGISGEAYITVQRTDLNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGLYVCLNRGNVDLKTQQQRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLLQSLFFSRASLSEGENDNNLTKITIGGIILRDIYSSPQCTLVQPSMQAVTKDAFHVPEFARSFCPPIYPLGEQQWQVIEGIPLICLHALQVMPSPLPPSFASQTVIDCQPLMVHLQEETCLRISSFLADDIVVSPGDILPDFSIKSFIFSLKGLDLTVPLDNIETDISKIYMDNNTVQTSFTGARLQIENLSFSDSPSLKLIMLNLEKDPACFSLWEGQPIDASQKKWTARASQLTLSLEACNDKIKLQNYLGQTGGLLRCVDLKDACIEVAMATADGSPLLHIPPSGGIVRVGVACGQYLSNTSVEQLFFVLDVYGYFGRVSEKIAMVGKRKQLEDVRDKSFSGKLMDKVPSDTAVSLTVKDLQLRFLESSVNVEGMPLVQFIGDDLFINAAHKTLGGAIVVSSTLRWESVQIDCVDAEGHLPCENGSFLSPSENVPSPSDNGYPHLRAVFWVDKNKKHPMNGNAHSIPFLDISMVHVIPLNEQDMESHSLNVSASVSGVRLGGGMNYAEALLHRFGILGPDGGPGTGLSKGLENLQKGPLSKLFKTTPLMVDNSEDAESMRQGEETSFPHLKKPDDVDVTIELRDWLFALEGADQMAEQWWFSSLEVVDREERCWHTTFRGLRVNAKSSPKKVLDGKAQLHRIKQNPIELVTVGIEGLRILKPHIQKGNPPSMLIANGDKENSNTTEGVGLEVRLILCEDNTDDIVNWEVEDIKFAVKQPIEAAVTKDELQHLTLLCKSEIDSIGRITAGVLRLLKLEGSVGQAVIDQLGNLGSEGIDKIFSSEKVTRDGSVVGNRGHSPLPSGVNEGPHKTMEETLTQLEEVVVESQAKLSELITHVGTSDSSSTQHRTIVKLSQKIETMQGLLMQLRNQL 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01116 1220 Coils Coil 1158 1178 - -
Aip08g01116 1220 Coils Coil 1199 1220 - -
Aip08g01116 1220 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1219 - -
Aip08g01116 1220 PANTHER UNCHARACTERIZED 1 1219 IPR026728 -
Aip08g01116 1220 Pfam N-terminal region of Chorein or VPS13 1 104 IPR026854 -
Aip08g01116 1220 MobiDBLite consensus disorder prediction 1137 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01116 Aip-Chr8 14942962 14950499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01116 - - ahf:112802603 1936.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01116 08 14942962 14950499 Aip08g01116 08 14942962 14950499 ECH
Aip08g01116 08 14942962 14950499 Aip03g01931 03 26193043 26203027 PCT