Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00878 ATGGATAAACATGAACCTGAAGCAGTTAGAAGCACTAGCAGTTATGTCAACAATGGCAACATCAATGATCATGAAGGCGACATCATTAGGTGGTTCGAGGAAGTGTCTGCCAAGGCCGGTGCGGTCCAAACGGAGGTGCTATGCCGGATCCTGAAAGAGAATTTCAAGGTGGAATATCTGAAGAAATGGTTATTATTGATCACAGATCACCATCCATTTTTCTTTGGAAAAAAAAAAGAGAAAATTTTGATATTCTTGTGTGGTGGGGGTGGTTTTTGCAGTTCCGGAACCACAGAAGGAAGGCAGAAATTTGTTCCATTCACGAGGCACAGTGCACAAACAACCCTTGAAACTTTCACTTTATCTGCAGCATATAGATCAAGGGTTTATCCAATAAGGGAAGGAGGTAAGATTCTTGAATTCATATACAGCGGCAACCAATTCAAAACAAAAGGAGGGTTAATTGCAGGAACCGCCACAACACACTACTATGCAAGTGAGGAGTTCAGGATCAAACAGGAGAGAACTAAGTCATTCACTTGCAGCCCCTATGAGGTTATCTCCGCCGGTGACTACAAGCAATCCACCTACTGCCACCTCCTCCTCGGCCTCTTCTTCTCTCATGATGTCGAATTCATCACCTCTGCCTTCGTCTATGGCATCGTCCAAGCCTTTCGCAGCTTCGAAGAGCTCTGGAGAGACTTGTGCCATGACATTCGACATGGCACCTTAAGTTCTAGAATAAAGAAGGTACCAAAAATGAGAGAGGCGGTGTTGGAAATCATAACACCAAACGAATGTTTGGCATCAAGAATAGAAGGGATATGCGAGGAGGTAGAAGTGATGGATTGGTTTGGTTTGATTCCAAAGCTATGGCCAAATGCAAAGTACGTGTATTCGATAATGACAGGTTCAATGCAACCATATTTGAAGAGGCTAAGGCACTATGCAAATGGGTTACCATTGGTGAGTGGTGACTATGGTTCAAGTGAGAGCTGGATTGGGGTTAATGTGGATCCAAGTTCACCACCAGAGAGTGTCACATTTGCAGTGGTTCCAACTTTCTCTTACTTTGAGTTCATACCACTTTACAGACACAAACATAGTTGCGGTTCCTCTCATGATGGTGGTGCTGATGATTTCGTTGAAGACAAGCCAATCCCACTATCTAAGGTTAAAGTTGGACAAGAGTACGAAATTGCACTCACCACTTTCACTGGACTGTACAGGTGCAGATTGGGAGATGTAGTAGAAGTAGGTGGATTCCACAATGGGACCCCAAAACTTAACTTCATATGCAGAAGGAAACTGATCCTAACAGTGAACATAGACAAGAACACAGAGAAGGACCTCCAAGCAGTGGTGGAGAAAGCCTCTCACATCCTCCAATCACAAACAAACAACAACGCCGAGCTTGTTGACTTCACAAGCTACGCCGACCTAACAACCCAACCCGGCTGCTACGTCATTTTCTGGGAGATCAAAGGAGAGGCACACGATCATGTGCTTCAATCTTGTTCCACTGAAATGGACGCTGCTTTTGTTGACTATGGCTACGTCGTTTCCAGGAAAACAAGCTCCATAGGGCCATTGGAGCTTTGCATTCTGGAGAAGGGTACGTTCAAGAAGATTCTGGACTGTTTTGTTGCAAATGGTGCCACTTTGGGACAGTTCAAGACTCCTAGGTGCACCAATAACCCTCTCTTGCTCAACATTCTTCATGCATGCACCCTTAAGATCTTTCGCAGCACTGCTTATGCTTAA 1764 0.4461 MDKHEPEAVRSTSSYVNNGNINDHEGDIIRWFEEVSAKAGAVQTEVLCRILKENFKVEYLKKWLLLITDHHPFFFGKKKEKILIFLCGGGGFCSSGTTEGRQKFVPFTRHSAQTTLETFTLSAAYRSRVYPIREGGKILEFIYSGNQFKTKGGLIAGTATTHYYASEEFRIKQERTKSFTCSPYEVISAGDYKQSTYCHLLLGLFFSHDVEFITSAFVYGIVQAFRSFEELWRDLCHDIRHGTLSSRIKKVPKMREAVLEIITPNECLASRIEGICEEVEVMDWFGLIPKLWPNAKYVYSIMTGSMQPYLKRLRHYANGLPLVSGDYGSSESWIGVNVDPSSPPESVTFAVVPTFSYFEFIPLYRHKHSCGSSHDGGADDFVEDKPIPLSKVKVGQEYEIALTTFTGLYRCRLGDVVEVGGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQAVVEKASHILQSQTNNNAELVDFTSYADLTTQPGCYVIFWEIKGEAHDHVLQSCSTEMDAAFVDYGYVVSRKTSSIGPLELCILEKGTFKKILDCFVANGATLGQFKTPRCTNNPLLLNILHACTLKIFRSTAYA 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00878 587 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 23 65 - -
Aip08g00878 587 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 93 586 - -
Aip08g00878 587 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 23 65 IPR004993 -
Aip08g00878 587 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 93 586 IPR004993 -
Aip08g00878 587 Pfam GH3 auxin-responsive promoter 93 566 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00878 Aip-Chr8 9612059 9624810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00878 19 584 EF-hand Containing Proteins AT1G23160 33.333 2.46e-101 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00878 K14487 - gmx:100792358 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00878 08 9612059 9624810 Aip08g00878 08 9612059 9624810 ECH
Aip08g00878 08 9612059 9624810 Aip03g01701 03 20576585 20583470 PCT