Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00849 ATGGTTGTCCAATGCATGTCTTCTGCCACAGATGCTCCTACTGTTTCTGAGACAAAGTTAAATTTCCTTAAGGCATATAAGCGACCAATCCCAAGTATCTACAACACTGTTCTGCAGGAGCTCATTGTGCAGCAACATTTGATGAGATATAAGAGATCGTATCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTTTATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCTATCTTCAAAGCATATATTAATGCTTTGAATGAAGATCCTGAACAATACAGAAAAGATGCTCAAAAGTTGGAAGAGTGGGCGAGGGCTCAAAACCTAACTTCCCTTGTTGAGTTTTCATCCAAAGATGGAGAAATTGAGGGGATCTTGAAGGACATAGCAGAAAGAGCAGGAAAGGGGGATTTCAGCTACAGTCGTTTCTTCGCAGTAGGACTATTTCGTCTTCTTGAGTTAACAAACGCAACAGAGCCAACAATTTTGGAAAAGCTCTGCGCAGCTTTAAACATCAACAAAAAAAGTGTTGATCGGGACTTGGATGTGTATCGGAATCTGCTTTCCAAGTTGGTTCAAGCAAAGGAGCTGCTAAAGGAATACGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGAGCTGAACCCCAAAAGGCTAATGAGACCATTACAAAGTGTTTGGGACAACAACTGTCTGAGTTTGGATAA 723 0.4163 MVVQCMSSATDAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYINALNEDPEQYRKDAQKLEEWARAQNLTSLVEFSSKDGEIEGILKDIAERAGKGDFSYSRFFAVGLFRLLELTNATEPTILEKLCAALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANETITKCLGQQLSEFG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00849 240 Coils Coil 190 220 - -
Aip08g00849 240 Pfam Thylakoid formation protein 14 218 IPR017499 GO:0010207|GO:0015979
Aip08g00849 240 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 229 IPR017499 GO:0010207|GO:0015979
Aip08g00849 240 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 11 215 IPR017499 GO:0010207|GO:0015979
Aip08g00849 240 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 229 - -
Aip08g00849 240 Hamap Protein Thf1 [thf1]. 9 216 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00849 Aip-Chr8 9087523 9089522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00849 - - lja:Lj3g3v2768250.1 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00849 08 9087523 9089522 Aip08g00849 08 9087523 9089522 ECH
Aip08g00849 08 9087523 9089522 Aip03g01666 03 19981066 19985283 PCT