Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01666 ATGGCCGCTGTTACTTCTTCTTTCTCTCTCTCTACTCTTTCACAGTGCTCGCAGAGGAAGAACCTTTCCCTCTCTTCGTCTACTCGTTTTTTGGGAACCAATTCCGATTCTTTCCGATTGGGACCGAATTTCTCGCTACTATATGTTGCCGTTCGAGCTTCCGATTCCGCTTCCAGAGTGATTGTTCGGTGTTCCTCTTCCCTCTCAGATATTCCAACTGTTTCGGAGACAAAGTTAGGTTTCCTTAAAGCCTATAAACGACCAATCCCTAGTATCTACAACAGTGTGTTGCAGGAGCTGATTGTCCAGCATCATTTGATGAGATACAAGAGATCATACCAGTATGACCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGATCGGGATGCTATCTTCCAGGCATACATTAATGCATTGAAGGAAGATCCAGAACGATACAGAGCAGATGCACAGAAGTTGGAAGAATGGGCACGGGCTCAAAACTCAACCTCCCTGATTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGAATACTAAAGGATATTGCAGAAAGAGCTGGAGCAAAGGGGAATTTTAGCTATAGTCGCTTCTTTGCAATTGGCCTCTTTCGCCTTCTTGAATTGGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTGCAGCTTTAAATGTTAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTACTTTCCAAGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAGAGAGAAGAAAGGTCTGAACCACAAAAGGCAAATGAGGCCATCACAAAATGTTTGGGACAACAGCAAATTTCTGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA 951 0.4101 MAAVTSSFSLSTLSQCSQRKNLSLSSSTRFLGTNSDSFRLGPNFSLLYVAVRASDSASRVIVRCSSSLSDIPTVSETKLGFLKAYKRPIPSIYNSVLQELIVQHHLMRYKRSYQYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPERYRADAQKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGAKGNFSYSRFFAIGLFRLLELANAMEPTILEKLCAALNVNKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSEPQKANEAITKCLGQQQISAXXXXXXXXXXXXXXXXX 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01666 316 Coils Coil 297 299 - -
Aip03g01666 316 Hamap Protein Thf1 [thf1]. 68 276 IPR017499 GO:0010207|GO:0015979
Aip03g01666 316 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 289 - -
Aip03g01666 316 Coils Coil 250 280 - -
Aip03g01666 316 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 289 IPR017499 GO:0010207|GO:0015979
Aip03g01666 316 Pfam Thylakoid formation protein 73 278 IPR017499 GO:0010207|GO:0015979
Aip03g01666 316 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 70 275 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01666 Aip-Chr3 19981066 19985283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01666 - - aip:107632658 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01666 03 19981066 19985283 Aip03g01666 03 19981066 19985283 ECH
Aip08g00849 08 9087523 9089522 Aip03g01666 03 19981066 19985283 PCT