Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00570 ATGCCATCATTGCTTTCCTCTTCTCTCCTTCAAATGCTTCCTCTTCTATTCTCTCTTATAATCTCACTCATGCTTTGTGGAATCATTGCTGATGAGTCTCCACCTTCACCTGGCTACTACCCTAGTTCCCAAGTTAGTTCTGTTGCCTTTGATCAAGCTTATAGAAACCTTTGGGGACCTCAGCACCAAAGACTAGACCAATCTGGCTCACTAACTATTTGGCTTGACTCTTACTCTGGAAGTGGATTCAAGTCAATCCGGCCGTATCGATCCGGATACTTTGGTGCTGCCATTAAGCTTCAATCTGGTTACACTGCAGGAGTGATTACATGTCTCTATCTTTCAAACAACCAAGACTACCCAGGAGACCATGATGAAGTGGACATTGAGTTCCTTGGTACCATCCCAGGTAAGCAATATGTGCTGCAGACAAATGTGTTCATGAGAGGAAGCGGAGACAAGAATAATGTGATAGGAAGAGAGATGAGGTTTCACCTTTGGTTCGATCCAACACAAGATTTTCACCACTATGCTATTCTATGGACACCCACTGACATCATATTTTTGGTGGACGATGTTCCAATAAGGAATTACCCAAGAAAGAATGATGCAACATTCCCTGAAAGAGCAATGTACGTGTACGGATCAATATGGGATGCATCATCATGGGCCACAGAGAATGGTAAATACAAAGCTGATTACAAATACCAACCATTCATTGGAAGATACAAAGATTTCAAGCTCCAAGGTTGCACCACTCAATCTTCCTCCTCATGCCAGCCACCCTCACCTTCACCACCTGGCTACAATTCACTAAGTCCTCAACAGTATAATGCAATGCAATGGGTCCAAAACAATTACTTGGTCTATGACTATTGCCGTGATCCCAATAGAGACCATACCCTTACTCCAGAATGCTAA 921 0.4311 MPSLLSSSLLQMLPLLFSLIISLMLCGIIADESPPSPGYYPSSQVSSVAFDQAYRNLWGPQHQRLDQSGSLTIWLDSYSGSGFKSIRPYRSGYFGAAIKLQSGYTAGVITCLYLSNNQDYPGDHDEVDIEFLGTIPGKQYVLQTNVFMRGSGDKNNVIGREMRFHLWFDPTQDFHHYAILWTPTDIIFLVDDVPIRNYPRKNDATFPERAMYVYGSIWDASSWATENGKYKADYKYQPFIGRYKDFKLQGCTTQSSSSCQPPSPSPPGYNSLSPQQYNAMQWVQNNYLVYDYCRDPNRDHTLTPEC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00570 306 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 306 IPR013320 -
Aip08g00570 306 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 29 243 IPR000757 GO:0004553|GO:0005975
Aip08g00570 306 ProSiteProfiles Kringle domain profile. 237 306 IPR000001 -
Aip08g00570 306 Gene3D - 30 306 - -
Aip08g00570 306 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 270 306 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip08g00570 306 PIRSF EndGlu_transf 11 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip08g00570 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 306 IPR044791 GO:0004553
Aip08g00570 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 15 306 - -
Aip08g00570 306 Pfam Glycosyl hydrolases family 16 51 235 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00570 Aip-Chr8 4917590 4919245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00570 13 306 Glycoside Hydrolase AT3G44990 67.119 2.81e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00570 K08235 - gmx:100796768 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00570 08 4917590 4919245 Aip08g00570 08 4917590 4919245 ECH
Aip08g00570 08 4917590 4919245 Aip03g00291 03 2835476 2837928 PCT