Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00291 ATGTTCACTACAATGCTGCCATCATCACCCCTTTCTTTCTTCTTCCTTCTTGTACTCTCATTCATGATATGTGCTAGTGCTCAGGGTCCACCTTCACCTGGCTACTACCCTGGTTCCAAAATTAGTCCTATTAGCTTCGATCAAGGGTTCAGAAACCTATGGGGACCTCAGCATCAGAGGCTAGAACAAGGCACATTATCAATATGGCTAGATTCTAACTCGGGGAGTGGATTCAAGTCACTTCACTCTTATCAATCTGGATACTTTAGTGCTGCAATTAAGCTTCAACCCGGTTATACTGCAGGGGTCATTACAACTCTCTATCTTTCAAACAACCAAGATCACCCCGGAAATCACGACGAAATCGACATTGAGTTCCTAGGTACCACCCCTGATAAGCCATATGTTCTGCAGACAAATGTATACATAAGAGGAAGTGGTGATGGCAACATTGTAGGGAGAGAGATGAAGTTTCATCTTTGGTTTGATCCAACACAAGATTTTCACATCTATGCTATTCTATGGAAACAAAGTGAGATAATATTTTTTGTGGATGATGTTCCCATAAGGAGGTACCCTAGGAAAGGTGATGCTACATACCCAAATAGACCAATGTATGTGTATGGATCAATATGGGATGCATCTCCATGGGCAACAGAAGATGGAAAATACAAAGCAAATTATAAATACCAACCCTTCATTGGTAGGTACAAGAACTTCAAGCTCCAAGGTTGCACCATTAATGAAAGCCCTTCCTCATGCAAGCCACCATCTGCATCACCATCAGGGTATGGAAGTCTTAGTCTTCAGCAAATTTCAGCCATGCAATGGGTCCAAAACCACTACCTGGTCTATTATTATTGCCATGACCCTAAGAGAGATCATACTCTTACCCCAGAGTGCTAG 906 0.4227 MFTTMLPSSPLSFFFLLVLSFMICASAQGPPSPGYYPGSKISPISFDQGFRNLWGPQHQRLEQGTLSIWLDSNSGSGFKSLHSYQSGYFSAAIKLQPGYTAGVITTLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIVGREMKFHLWFDPTQDFHIYAILWKQSEIIFFVDDVPIRRYPRKGDATYPNRPMYVYGSIWDASPWATEDGKYKANYKYQPFIGRYKNFKLQGCTINESPSSCKPPSASPSGYGSLSLQQISAMQWVQNHYLVYYYCHDPKRDHTLTPEC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00291 301 PIRSF EndGlu_transf 9 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g00291 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 301 - -
Aip03g00291 301 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 25 237 IPR000757 GO:0004553|GO:0005975
Aip03g00291 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 301 IPR044791 GO:0004553
Aip03g00291 301 Pfam Glycosyl hydrolases family 16 47 229 IPR000757 GO:0004553|GO:0005975
Aip03g00291 301 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 264 301 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip03g00291 301 Gene3D - 26 301 - -
Aip03g00291 301 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 301 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00291 Aip-Chr3 2835476 2837928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00291 11 301 Glycoside Hydrolase AT3G44990 64.626 1.74e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00291 K08235 - gmx:100781528 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00291 03 2835476 2837928 Aip03g00291 03 2835476 2837928 ECH
Aip08g00570 08 4917590 4919245 Aip03g00291 03 2835476 2837928 PCT