LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00518	ATGAGTGAGATCACTTCACCTTCGCCGGAAATTCAATCCAATTCGAGTTCTGCTAGCTCTGATAACGACCCTGACCCTCCCATCCACCTCCAGTTGCCTCCTCTCTCGTACTCCCTCTTCGACGCTGAACCCTCCGAACCAAACGGCGTCGTTCACGGATCCGCTTCTTCTGAACCTCCAAAACCCTCGCAGTCGCACGAGGTTGTGATTCGCGGCTCCTCCGAACCTGCCAGCCCTAGCAGCAGCGGTTACGCCGGGGAAAGAGGCAGCAGCAGCGCCACCAGCATCTCCGCTGCCGATGACCTAACTCACCACGAAATTGAGGAGCTCAGCATCCACGATGATCCCCTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGCAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTCTTTGTTCTCAGTCATTCTGGCAAACCTATATACTCTAGGTATGGGGATGAACACAAGCTTGCTGGGTTTTCAGCAACGTTGCAAGCTATCATTTCATTTGTGGAAAATGGGGGTGACCGTGTCAAATTGGTGAGGGCCGGAAATCATCAGGTGGTTTTTCTTGTGAAAGGGCCTATTTACTTAGTTTGCATTAGCTGCACAGAAGAGCCTTATGAGTCGTTAAGAGGGCAGTTGGAGCTTATCTATGGCCAGGTGATTGTTATACTGACAAAGTCAATAAACAGATGTTTTGAGAGGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACACCGTCTTCTCTTCACTAATTCATTCTTTTAATTGGAATCCGGCTACATTTCTTCATGCTTATACCTGTCTGCCCCTTACATATGCAACAAGGCAAGCTGCTGGTGCTATCTTGCAGGATGTTGTGGATTCAGGTGTTCTGTTTGCAATACTAATGTGCAGGCACAAGGTAATCAGTCTAGTTGGTGCACAGAAAGCCACACTTCATCCAGATGATATGCTACTGCTGGTCAACTTCGTTATGTCAACAGAATCCTTTAGGCAAGTAGAATGTCTTTTTATCTTTCAGATAACATCGCCATGTTGTTTGACATCTGAATCATTTTCACCTGTTTGCTTGCCAAGATACAATCCTCTGGCATTTTTGTATGCTTACATCCATTATTTTGACGATGATACATACTTGATGTTGCTGACCACTCGTTCAGATGCTTTTTACCATCTCAAGGATTGCAGGATTCGTATCGAAACCGTCCTGTTGAAGTCCAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGAATGCGTGTTGAAGATCTGCCACCCTTACCTCCTCATTCTGGATCATCATCTCATTTGGGCTATCCCGGGCTTCCAACAGATTCTCCTTATAGATCGAGGGAACCGGGTTCTGGCACTGGTGGTGCTGCTGGTTTGTGGCATTTCATATACCGAAGTATATTTCTGGATCAATACGTATCTTCAGATTTCTCATCACCAGTGAACACTCCTCAGCAGCAGAAAAGGCTATATAGAGCTTATCAGAAGATTTTTTCTTCAATGCATGATAAAGGAATTGGCCCTAACAAAACTCAGTTTAGAAGGGATGAAAACTATGTTCTGCTGTGTTGGGTAACACAGGATTTTGAGCTTTACGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACTTGCAATAGGGTTTGTCAATGGGTAAAAGATGTTGAAAATGAAATATTTTTGCTAGGAGCTAGCCCCTTTTCATGGTGA	1779	0.4446	MSEITSPSPEIQSNSSSASSDNDPDPPIHLQLPPLSYSLFDAEPSEPNGVVHGSASSEPPKPSQSHEVVIRGSSEPASPSSSGYAGERGSSSATSISAADDLTHHEIEELSIHDDPLPXXXXXXXXXXHLQDDASISWRKRKKHFFVLSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRVKLVRAGNHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQVIVILTKSINRCFERNPKFDMTPLLGGTDTVFSSLIHSFNWNPATFLHAYTCLPLTYATRQAAGAILQDVVDSGVLFAILMCRHKVISLVGAQKATLHPDDMLLLVNFVMSTESFRQVECLFIFQITSPCCLTSESFSPVCLPRYNPLAFLYAYIHYFDDDTYLMLLTTRSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMRVEDLPPLPPHSGSSSHLGYPGLPTDSPYRSREPGSGTGGAAGLWHFIYRSIFLDQYVSSDFSSPVNTPQQQKRLYRAYQKIFSSMHDKGIGPNKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGASPFSW	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00518	592	MobiDBLite	consensus disorder prediction	1	24	-	-
	Aip08g00518	592	Pfam	First Longin domain of FUZ, MON1 and HPS1	143	264	IPR043972	GO:0016192
	Aip08g00518	592	Pfam	Third Longin domain of FUZ, MON1 and HPS1	478	578	IPR043970	GO:0016192
	Aip08g00518	592	PANTHER	SAND PROTEIN-RELATED	63	592	IPR004353	GO:0006623
	Aip08g00518	592	PANTHER	BNAC04G15860D PROTEIN	63	592	-	-
	Aip08g00518	592	MobiDBLite	consensus disorder prediction	57	99	-	-
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	392	418	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	161	181	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	195	209	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	557	570	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	541	555	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	570	590	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	246	258	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	275	296	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	143	160	IPR004353	GO:0006623
	Aip08g00518	592	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	364	387	IPR004353	GO:0006623
	Aip08g00518	592	Pfam	Second Longin domain of FUZ, MON1 and HPS1	304	411	IPR043971	GO:0016192
	Aip08g00518	592	MobiDBLite	consensus disorder prediction	437	470	-	-
	Aip08g00518	592	MobiDBLite	consensus disorder prediction	1	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g00518	Aip-Chr8	4192743	4197397	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00518	K20195		-	gmx:100816794	872.078

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g00518	08	4192743	4197397	Aip08g00518	08	4192743	4197397	ECH
	Aip08g00518	08	4192743	4197397	Aip03g00349	03	3401831	3405879	PCT