Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip08g00494 | ATGGACTTGGTATCTAGTTGTAAGGAAAAATTGAATTCTTTTCGCATAAAAGAGCTCAAAGATGTGCTCACTCAATTGGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTCATTGATAGGATATTGTCTATTCTCTCAGATGAACAGGCTTCCAAAATCTGGGCTAAGAAGAATGCTATTGGGAAAGAACAGGTGGCAAAATTAGTGGATGATACCTTTAGAAAATTGCAGGTATCTGGGGCCATTGATTTAGCATCAAAGGGACAGGGTTCCTCCCCAGATGTCAGTAATGTTAAAATTAAAGGTGAAGTTGATGAGATCTTTCAGGAAGAAACAAAGATTCGGTGTCTTTGTGGTAGTTCGTTGGAAACTGATCCACTGATAAAGTGTGAGGATACAAGATGCCATGTGTGGCAGCACATTAACTGTGTTATTATTCCAGAGAAACCTATGGAACCAATTCCACCCCTTCCTCAAAAATTTTACTGTGAACTCTGTCGACTCACTCGTGCAGATCCGTTTTGGGTTTCAGTGGCCACCCCTATGTTTCCTGTGAAGTTGACTACAACCCATATTCCAACTGATGGAGCCAACCCAGTGCAGAGTGTGGATAGAACATTTCAACTTACAAGGGCAGACAAAGACTTGGTATCAAGACCAGAATTTGATGTTCAGGCCTGGTGCATGCTGCTGAACGACAAAGTTTCATATAGGATGCAATGGCCACAATATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGTGATTAACCGACCTGGTTCACAACTGCTCGGGGCTAACGGCCGTGATGATGGCCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGCTGTGATGCTCGCATTTTCTGTTTAGGGGTCCGTATTGTTAAAAGGCGTAGCTTGCAACAGATCCTAAACACAATTCCCAAGGAGTCTGATGGGGAGCGTTTTGAAGATGCTCTTGCACGTGTATGTTCTCGTGTTGGGGGTGGAAATGCAGATGATAATGCTGACAGTGACAGTGATTTGGAAGTGGTCTCAGATACTTTTACCATCAACCTTCGTTGTCCAATGAGTGGTTCAAGAATGAGGGTTGCAGGAAGATTCAAACCTTGTGCTCACATGGGTTGCTTTGATCTTGAAATTTTTGTGGAAATGAATCAACGCTCAAGGAAGTGGCAATGTCCCATATGTCTTAAAAACTATGCATTGGAGGATATCATTATTGACCCTTATTTTAATCGGATAACTTCTATGATGAGAAATTGTGGGGAAGATGTTACTGAAATTGAGGTGAAGCCTGATGGTTATTGGCGTGCCAAGGCTAAGAGTGAAAGTGAACACCGGGAGTTAGGGAATCTTGTTCAATGGCACTGTCCTGATGGATCCCTGGCTCTTTCTACCAGTGGAGAAGTCAATGGAATGGAGGCTTTAAAGCTCAAACAGGAAGATGTTTCAGACACTCCAACTGGTCTAAGAATTGGCATGAAGAAGAATCATGATGGAGTTTGGGTATTCAGCAAACCTGAGGACACAAATACCTCATCTGGCAATGGATTGAACAAAGATTTTGGAAATCATGATCATGTGGTTATACCAATGAGCAGCAGTGACACTGTAAGTGGTCGGGAAGGTGATGATCCTAGTGTAAATCAGGGTGTCGGTGGGCATATTGATTATTCTCCTACCAATGGGATTGAGATGGATTCAGTGCCTCACAATAATGTTGATTCAGCTTATGGATATACTGTACCTAACCCTTCTGCTCTGGCAGCTGATGCAGAAGTTATTGTTCTCTCTGATTCAGAAGATGACAATGATATATTGGTATCTTCTACAATTGAGTATAAAAATAACGACACTGGTGCCGCTGATACTGATATTTACTCAATGCCACAGCCTGGAATTATTGATTCATATACAGATCACAATCTTGGTGGAAATCCATGCTTAGGGCTCTTCAGTAACCCCAATGAAGATGATTTTGGGATGCCTTCTTCCATCTGGTCATTGCCTTCAGGAACTCAGGCTGGCTCAGGATTCCAGTTATTTAGTTCAGATGCAGATGTCTCGGATGCATTGGTCCACTTGCAGAATGGTGATTTAAATGGTTATACGTTAGCTTCAGATACTTCTGCTTTGGAATCCAATTCTTTGATACAGGATTCCTCTGCAGGTCGATCTGATGCTGATTTAAATGGTGGTTTGGTTGGTGGTTTGGTAGACAATCCTCTGGCATTTGCTGGAGAAGATCCCTCACTTAAGATTTTTCTTCCAACAACACCACTGGAATCATCTGTGCAGCATGAATCAAGAGAACAGGCAGATGTGTCAAATGGTGTGTGCACTGATGATTGGATCTCTCTTAGGCTTGGAGGTGGTGCTGGTGGAAGTAATGGTAATGGTTCTGTCCCCAGTGGGTTGAATTCCAGATCGCAGGCTACATCCAGAGGAGGTGCAACAGACACATTGACAGATACTGGTTCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAAAGCAAGTAGGCCAAGATCTGACAGCCCATTCTCGTTTCCCCGCCAAAAACGTTCAAAACTGAAGAAAGCTGAGCAGCGATATTGGTGCTCAGGAAATGGAAGTTGA | 2652 | 0.4287 | MDLVSSCKEKLNSFRIKELKDVLTQLGLSKQGKKQDLIDRILSILSDEQASKIWAKKNAIGKEQVAKLVDDTFRKLQVSGAIDLASKGQGSSPDVSNVKIKGEVDEIFQEETKIRCLCGSSLETDPLIKCEDTRCHVWQHINCVIIPEKPMEPIPPLPQKFYCELCRLTRADPFWVSVATPMFPVKLTTTHIPTDGANPVQSVDRTFQLTRADKDLVSRPEFDVQAWCMLLNDKVSYRMQWPQYTDLQVNGVPVRVINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRSLQQILNTIPKESDGERFEDALARVCSRVGGGNADDNADSDSDLEVVSDTFTINLRCPMSGSRMRVAGRFKPCAHMGCFDLEIFVEMNQRSRKWQCPICLKNYALEDIIIDPYFNRITSMMRNCGEDVTEIEVKPDGYWRAKAKSESEHRELGNLVQWHCPDGSLALSTSGEVNGMEALKLKQEDVSDTPTGLRIGMKKNHDGVWVFSKPEDTNTSSGNGLNKDFGNHDHVVIPMSSSDTVSGREGDDPSVNQGVGGHIDYSPTNGIEMDSVPHNNVDSAYGYTVPNPSALAADAEVIVLSDSEDDNDILVSSTIEYKNNDTGAADTDIYSMPQPGIIDSYTDHNLGGNPCLGLFSNPNEDDFGMPSSIWSLPSGTQAGSGFQLFSSDADVSDALVHLQNGDLNGYTLASDTSALESNSLIQDSSAGRSDADLNGGLVGGLVDNPLAFAGEDPSLKIFLPTTPLESSVQHESREQADVSNGVCTDDWISLRLGGGAGGSNGNGSVPSGLNSRSQATSRGGATDTLTDTGSLLLGMNDARSDKASRPRSDSPFSFPRQKRSKLKKAEQRYWCSGNGS | 883 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip08g00494 | 883 | PANTHER | E3 SUMO-PROTEIN LIGASE SIZ1 | 9 | 817 | - | - | |
| Aip08g00494 | 883 | ProSitePatterns | Zinc finger PHD-type signature. | 116 | 166 | IPR019786 | - | |
| Aip08g00494 | 883 | SUPERFAMILY | FYVE/PHD zinc finger | 107 | 170 | IPR011011 | - | |
| Aip08g00494 | 883 | CDD | PHD_Bye1p_SIZ1_like | 115 | 166 | - | - | |
| Aip08g00494 | 883 | Pfam | MIZ/SP-RING zinc finger | 360 | 408 | IPR004181 | GO:0008270 | |
| Aip08g00494 | 883 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Aip08g00494 | 883 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
| Aip08g00494 | 883 | MobiDBLite | consensus disorder prediction | 847 | 873 | - | - | |
| Aip08g00494 | 883 | MobiDBLite | consensus disorder prediction | 807 | 840 | - | - | |
| Aip08g00494 | 883 | MobiDBLite | consensus disorder prediction | 801 | 883 | - | - | |
| Aip08g00494 | 883 | SMART | PHD_3 | 115 | 167 | IPR001965 | - | |
| Aip08g00494 | 883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 332 | 449 | IPR013083 | - | |
| Aip08g00494 | 883 | Gene3D | SAP domain | 1 | 64 | IPR036361 | - | |
| Aip08g00494 | 883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 172 | IPR013083 | - | |
| Aip08g00494 | 883 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 347 | 430 | IPR004181 | GO:0008270 | |
| Aip08g00494 | 883 | SUPERFAMILY | SAP domain | 1 | 64 | IPR036361 | - | |
| Aip08g00494 | 883 | Pfam | SAP domain | 11 | 42 | IPR003034 | - | |
| Aip08g00494 | 883 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 817 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip08g00494 | Aip-Chr8 | 3973737 | 3982228 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip08g00494 | - | - | gmx:100793735 | 1271.91 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip08g00494 | 08 | 3973737 | 3982228 | Aip08g00494 | 08 | 3973737 | 3982228 | ECH | |
| Aip08g00494 | 08 | 3973737 | 3982228 | Aip03g00382 | 03 | 3623951 | 3630016 | PCT |