Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00382 ATGCTCTCAGATGATCAAGTATCCAAAATGTTTGCCAAGAAGAATGCTATTGGAAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGAAAAATGCAGATATCTGGTGCCACTGACCTTGCATCAAAGGGACAGGGAGCCTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAAAAGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTATCTGCGGAAGTACATTGGATACAGATCCATTGGTCAAGTGTGACGATCCACGATGCCATGTGTGGCAGCACATAAATTGTGTTATTGTTCCAGAAAAACCTATGGAAGGTGTCCTGCCAGTACCTGATAAATTTTATTGTGAACTCTGTAGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAATGGGACACCCCTTGTTTCCTGTGAAGTTGAGCATAACAAGTAATCCAACTGATGGATCCAACCCAATGCAGAGTGTGGATAGAACATTTCAATTGACAAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATATTCAGGCTTGGTGTATGCTTCTGAACGACAAGGTTTCATTCAGGATGCAGTGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTACTTGGGGCTAATGGGCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTACCTTAACAGGATGTGATGCTCGCATTTTTTGTGTGGGGGTCCGTATTGTTAAAAGGCGCAGCATGCAACAGATCCTAAACATAATTCCAAAGGAACCTGAAGGTGAACAATTTGATGATGCTCTTGCACGAGTTCGTCGTTGTGTTGGAGGTGGAAATGAAGATGATAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGACACTTTTAGCATCAGCCTTCGTTGTCCGATGAGTGGTTCAAGGATGAAGATTGCAGGTAGATTCAAGCCTTGTATTCACATGGGATGTTTTGATCTTGAAGTTTTTGTGGAAATGAACCAAAGGTCAAGGAAGTGGCAGTGCCCAATATGTCTCAAAAACTATGCGTTGGAGAATATCATTATTGATCCCTATTTCAATCGCATCACTTCTCGGATGACAAACTGTGGTGAGGAGGTTACAGATATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGACAAAGAGTGAAAGTGAGCGCCTGGAGTTGGGGAATCTTGCACAATGGCACTTCCCTGACGGGTCCCTCTGTGTTTCGGCTGATGGAGAAGGCAGAAGAGTGGAAGCTTTGAAGCTGGTCAAACAGGAGGGTGTTTCAGACAGTCCTACTGGCTTAAAGCTTGGCATTAGGAAGAATCGCGATGGACTTTGGGAAGTCAGCAAACCTGAGGACACAAACACCTCTTCTGGTAATAGATTGAAAGAGGTATTTGGAAATCATGAAGTGGTTATTCCAATGAGCAGTAGTGATGGTGATGATCCCAGTGTAAATCAGGGTGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGCATATTGATTATTCTACCACCAACGGAATTGAGATGGATTCTCCATATCTCAATAATGTTAATTTAGCATATGATTATACTGCAAATAACACTTCTGCTCAGGTAGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGATAATGATTTATTGGTATCTCCTGCAATTACCTATAAGAACAACGAAACTGAAGATGGTTACTCAGTGCCACCGCCTGGAATTGTTGATTCGTATAATGATGAGCACACTAATCTTGGTGGTAATTCATGCTTAGGACTTTTCCCTAATGATGATGATTTTGGTTTGTGGTCCTTACCACCTGGAACTCAGGCTGGCCCAGGATTCCAATTATTTAGTCCTGATGCAGATGTGTCAGATGCATTGGTGCATTTGCAGCATGGTCCTATTAATTGCTCATCTTCATTGAATGGTTATGCATTGGCTCCGGATGCTGGTTTGGGGTCTGGTAGTCTTATACCAGATTCCTCTGCTGGTCGATCGGATGCTGATTTAAATGTTGGATTGGTTGACAATCCATTGGCATTTGGGGGAGATGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGCAACATGA 2193 0.4209 MLSDDQVSKMFAKKNAIGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSNVKIKGEKDDSFQSDTKIRCICGSTLDTDPLVKCDDPRCHVWQHINCVIVPEKPMEGVLPVPDKFYCELCRLSRADPFWVSMGHPLFPVKLSITSNPTDGSNPMQSVDRTFQLTRADKDLVSKPEFDIQAWCMLLNDKVSFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKITLTGCDARIFCVGVRIVKRRSMQQILNIIPKEPEGEQFDDALARVRRCVGGGNEDDNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSRMTNCGEEVTDIEVKPDGSWRVKTKSESERLELGNLAQWHFPDGSLCVSADGEGRRVEALKLVKQEGVSDSPTGLKLGIRKNRDGLWEVSKPEDTNTSSGNRLKEVFGNHEVVIPMSSSDGDDPSVNQGGGGGGGGGGGGGHIDYSTTNGIEMDSPYLNNVNLAYDYTANNTSAQVGGAEVIVLSDSEEDNDLLVSPAITYKNNETEDGYSVPPPGIVDSYNDEHTNLGGNSCLGLFPNDDDFGLWSLPPGTQAGPGFQLFSPDADVSDALVHLQHGPINCSSSLNGYALAPDAGLGSGSLIPDSSAGRSDADLNVGLVDNPLAFGGDDXXXXXXXXXXXXXXXXSAT 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00382 730 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 712 - -
Aip03g00382 730 ProSiteProfiles Zinc finger SP-RING-type profile. 303 386 IPR004181 GO:0008270
Aip03g00382 730 SMART PHD_3 71 123 IPR001965 -
Aip03g00382 730 SUPERFAMILY FYVE/PHD zinc finger 62 126 IPR011011 -
Aip03g00382 730 MobiDBLite consensus disorder prediction 41 60 - -
Aip03g00382 730 ProSitePatterns Zinc finger PHD-type signature. 72 122 IPR019786 -
Aip03g00382 730 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 1 712 - -
Aip03g00382 730 CDD PHD_Bye1p_SIZ1_like 71 122 - -
Aip03g00382 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 404 IPR013083 -
Aip03g00382 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 128 IPR013083 -
Aip03g00382 730 MobiDBLite consensus disorder prediction 471 529 - -
Aip03g00382 730 Pfam MIZ/SP-RING zinc finger 316 364 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00382 Aip-Chr3 3623951 3630016 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00382 - - aprc:113857557 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00382 03 3623951 3630016 Aip03g00382 03 3623951 3630016 ECH
Aip08g00494 08 3973737 3982228 Aip03g00382 03 3623951 3630016 PCT