Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00491 ATGGGAAACAGAAACAGCCTTTTGTTTTTTATCCTTGTTCTGATGTGTCATGGTGTAACCTTGACAATGGGGTTATGGAGGAATCATGATGATGTAGAAACGATGTTCTTGATGAAGAACTCCAAGAGTGTGGTTAAGACAGATGCTGGTGAGATGAGAGTTCTTGAAAGCTATGGTGATGCTAAGCTTATGGAGAGGCGCTTGCATATTGGATTCATCTCCATGGAGCCAAGGTCACTCTTCGTTCCTCAGTATATTGACTCAAGCTTCATCATTTTCCTCCATGAAGGGGAAGCAAAGCTGGGATTCATGTATAGAGGTAAGCTTAAAGAAAGAACATTGAAGATGGGGGATGTGTATAGAATCCCAGCTGGTTCAGCATTCTATTTGGTGAATATTGGTGAAGGTCAGAAACTTCACATTATCTGCAGCATTGATCCCTCAGGGGCAGTGGGAGCTGGTACTTTCCAGTCCTTCTATCTTGGAGGAGGAGCAAATCCAGCTTCAGTACTTTCCGGCTTCGGAACAGATATCCTTGAAGCTGCCTTTAATGTATCAGCAGAAGAAGTTAGGAAAATGTTCACAAGGCAACATGAGGGTCCAATTGTGAATCTGGATCAGCAAGACACAGGTTTGTGGAGCAAGTTCCTTCAATTGAAGGATGAGGACAAATTGCAACACCTGAAGGGAATGGTGCTAGACCAGCAAGAAGAAGATTTTGATGATGAAGATAATGATGGACAAGAAGAGGAGAAGCAAAGAGTATGGTCATGGAGGAAGCTCTTAGAATCAGTTGTTTGTGATGAGATAAAGAAAGCATGGAACCCCAACAAGGGTATGGGTAAGAAGCCCCCTCATATTTGCAACCTCTATGACAGAGCACCAGATTTCATCAACAGCCATGGTTGGAGTGTTGCTGTTGATGGCTCAGATTATTCTCCACTCAAAATGTCTGGTGTTGGCATTTATCATGTTAATCTCTCAGCGGGAGCGATGATGACGCCGCACATGAATCCAATGGCAACAGAGTATGGCATAGTGTTGAGAGGGAGTGGAAGAATCCAGATAGTGTTTCCAAACGGAACCAATGCAATGGATGCAGAGATCAAAGAAGGGGATGTGTTCTTCATCCCAAGGTACTTCCCTTTCTGCCAAATAGCATCAAAGGACCAACCATTGGAGTTCTTTGGCTTCACCACCTCTGCAAGTAAGAACAGGCCACAGTTTCTTGTGGGAGCCACGTCACTCATGAGGTCCATGATGGGTCCTGAGCTCGCTGCTGCCTTTGGTGTGAGCGAGGAAACCATGCGCCACATGGTTGATGCACAGCATGAGGATGTCATACTTCCATATCCACATCATCAAGATCATAACAAGGAAGTGGTTGAGGTTGACACCATTCCAAAGCTTATAAGGAATGCCATGGTTTTGGGATGGTAA 1440 0.4458 MGNRNSLLFFILVLMCHGVTLTMGLWRNHDDVETMFLMKNSKSVVKTDAGEMRVLESYGDAKLMERRLHIGFISMEPRSLFVPQYIDSSFIIFLHEGEAKLGFMYRGKLKERTLKMGDVYRIPAGSAFYLVNIGEGQKLHIICSIDPSGAVGAGTFQSFYLGGGANPASVLSGFGTDILEAAFNVSAEEVRKMFTRQHEGPIVNLDQQDTGLWSKFLQLKDEDKLQHLKGMVLDQQEEDFDDEDNDGQEEEKQRVWSWRKLLESVVCDEIKKAWNPNKGMGKKPPHICNLYDRAPDFINSHGWSVAVDGSDYSPLKMSGVGIYHVNLSAGAMMTPHMNPMATEYGIVLRGSGRIQIVFPNGTNAMDAEIKEGDVFFIPRYFPFCQIASKDQPLEFFGFTTSASKNRPQFLVGATSLMRSMMGPELAAAFGVSEETMRHMVDAQHEDVILPYPHHQDHNKEVVEVDTIPKLIRNAMVLGW 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00491 479 CDD cupin_7S_vicilin-like_N 44 208 - -
Aip08g00491 479 Gene3D Jelly Rolls 280 452 IPR014710 -
Aip08g00491 479 CDD cupin_7S_vicilin-like_C 295 445 - -
Aip08g00491 479 Pfam Cupin 41 190 IPR006045 -
Aip08g00491 479 Pfam Cupin 289 436 IPR006045 -
Aip08g00491 479 PANTHER OS03G0336100 PROTEIN-RELATED 1 458 - -
Aip08g00491 479 SMART Cupin_1_3 288 437 IPR006045 -
Aip08g00491 479 SMART Cupin_1_3 36 191 IPR006045 -
Aip08g00491 479 Coils Coil 233 253 - -
Aip08g00491 479 Gene3D Jelly Rolls 28 218 IPR014710 -
Aip08g00491 479 PANTHER OS03G0336100 PROTEIN 1 458 - -
Aip08g00491 479 SUPERFAMILY RmlC-like cupins 42 445 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00491 Aip-Chr8 3930049 3932236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00491 43 449 Miscellaneous Gene Families AT2G18540 30.260 6.69e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00491 - - gmx:100818796 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00491 08 3930049 3932236 Aip08g00491 08 3930049 3932236 ECH
Aip08g00491 08 3930049 3932236 Aip03g00387 03 3693421 3696923 PCT