Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00488 ATGAGGACCAGCAACCACTTGATTGGAGTACTGAACTTCTTAACGTTCCTGGTCTCAGTTCCGATCCTAGGCGGCGGAATATGGCTGAGCAGCAGGGCCAACAACACCGACTGCATGAGGTTCCTGCAGTGGCCATTGATCATCATCGGGATCACCATCATGGTGGTGTCCTTGGCGGGTTTCGCCGGCGCGTGTTACCGCAACACCTTCCTAATGAGACTCTACCTGGTGGTCATGTTCATCGTCATCGCGGTCCTCATAGGCTTCATAGTGTTTGCCTACGTAGTCACCGAAAAAGGGTCGGGCCAGGTGGTGCCGAACCGGGCCTACTTGGATTACTACCTGTCGGACTACTCGGGCTGGTTGGAGGAGCGGGTCGCCAGTGACTCATATTGGCCCAAGATAAGTTCTTGTATTAGGGATTCTAAGGTCTGTGCTAAGCTTTCTGCCGTTCCTGAAACTGCTGATATGTTCTACCAAAGAAAACTTTCTCCCATTCAGTCTGGTTGTTGCAAGCCGCCAACAGAGTGTGGGTATGTGTACCAGAACGAGACAGTGTGGAACCAAGGCGGAGGCCTGGTTGGAACTGACCCTGATTGCAGCCGGTGGAGCAATGACCAGCAGATGCTCTGCTACTCGTGCGACTCTTGCAAGGCCGGCGTCCTCGCCAGCCTCAAGAAGAGCTGGAGGAAGGTCTCTGTCATCAACATTGTTGTCATGATCATCCTTGTCATCCTCTATGTCGTCGCTTACGCCGCCTACCGCAACAACCGCCGGATGGACAATGATGAGCCCTACGGTCAAGCAAGGATGACAAAGACACAACCTAGCGCCTTTCATCTCTAG 846 0.5331 MRTSNHLIGVLNFLTFLVSVPILGGGIWLSSRANNTDCMRFLQWPLIIIGITIMVVSLAGFAGACYRNTFLMRLYLVVMFIVIAVLIGFIVFAYVVTEKGSGQVVPNRAYLDYYLSDYSGWLEERVASDSYWPKISSCIRDSKVCAKLSAVPETADMFYQRKLSPIQSGCCKPPTECGYVYQNETVWNQGGGLVGTDPDCSRWSNDQQMLCYSCDSCKAGVLASLKKSWRKVSVINIVVMIILVILYVVAYAAYRNNRRMDNDEPYGQARMTKTQPSAFHL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00488 281 Pfam Tetraspanin family 6 249 IPR018499 GO:0016021
Aip08g00488 281 PANTHER TETRASPANIN-8-RELATED 1 275 IPR044991 GO:0009734|GO:0016021
Aip08g00488 281 PANTHER TETRASPANIN-3-LIKE 1 275 - -
Aip08g00488 281 PRINTS Transmembrane four family signature 6 29 - -
Aip08g00488 281 PRINTS Transmembrane four family signature 39 65 - -
Aip08g00488 281 PRINTS Transmembrane four family signature 66 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00488 Aip-Chr8 3859843 3862204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00488 1 273 Miscellaneous Gene Families AT5G60220 71.119 1.05e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00488 - - gmx:100788977 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00488 08 3859843 3862204 Aip08g00488 08 3859843 3862204 ECH
Aip08g00488 08 3859843 3862204 Aip03g00394 03 3777574 3783929 PCT