Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00394 ATGAGAGCAAGCAACCACTTAATTGGAGCACTAAACTTCCTAACTTTCCTCCTCTCGATCCCAATCCTGGGCGGCGGAATATGGCTGAGCAGCCGCGCCAGCACGACCGACTGCCTCCGGTTCCTGCAGTGGCCCCTAATCGTGATCGGAATCAGCATCATGGTAGTTTCACTGGCGGGCTTCGCAGGCGCGTGTTACCGCAACACCTTCCTAATGCGTCTCTACCTGGTGGTAATGTTCGTCGTCATTGCGGTTCTCATCGGCTTCATCATCTTCGCGTATGTTGTAACTGACAAGGGATCGGGCCGGGCCCTCTTGAACCGGGCCTACTTGGACTACTACCTTCAGGACTACTCGGGCTGGCTGGAGGAGCGCGTGGCCAGCAACGCTTACTGGCCCAAGATAAGCGCGTGTGTTAGGGACTCTAAGGTTTGTGGTAGAATGGGAAGAAGCATTAATGGAGTTCCTGAGACTCCTCAAATGTTCTATCTTAGAACCCTCTCTCCCATTCAGTCTGGTTGTTGCAAGCCTCCAACAGAATGTGGCTATATCTACCAAAATGAAACGGTTTGGAACATCGGGTCTGGCGCAATGGCGGCCAACCCGGACTGCGCAAGGTGGAGCAATGACCAAGAGATGCTCTGTTATGCCTGCGACTCTTGCAAGGCCGGGGTGTTGGCAAGTCTCAAGAAGAGTTGGAGGAAGGTCTCCGTCATCAATATCATCGTCATGATCATCCTTGTAATTGTCTACATCATTGCATACACCGCGTTTCGGAACAATCGGAAGATGGACAACGACGAACCCTACGGAGAAGCCAGAATGACAAAGGCACAACCTAGTAGAATAAATATTTAG 858 0.5175 MRASNHLIGALNFLTFLLSIPILGGGIWLSSRASTTDCLRFLQWPLIVIGISIMVVSLAGFAGACYRNTFLMRLYLVVMFVVIAVLIGFIIFAYVVTDKGSGRALLNRAYLDYYLQDYSGWLEERVASNAYWPKISACVRDSKVCGRMGRSINGVPETPQMFYLRTLSPIQSGCCKPPTECGYIYQNETVWNIGSGAMAANPDCARWSNDQEMLCYACDSCKAGVLASLKKSWRKVSVINIIVMIILVIVYIIAYTAFRNNRKMDNDEPYGEARMTKAQPSRINI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00394 285 PRINTS Transmembrane four family signature 6 29 - -
Aip03g00394 285 PRINTS Transmembrane four family signature 39 65 - -
Aip03g00394 285 PRINTS Transmembrane four family signature 66 94 - -
Aip03g00394 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Aip03g00394 285 Pfam Tetraspanin family 6 253 IPR018499 GO:0016021
Aip03g00394 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00394 Aip-Chr3 3777574 3783929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00394 1 277 Miscellaneous Gene Families AT5G60220 71.480 9.31e-131 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00394 - - gmx:100788977 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00394 03 3777574 3783929 Aip03g00394 03 3777574 3783929 ECH
Aip08g00488 08 3859843 3862204 Aip03g00394 03 3777574 3783929 PCT