Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip08g00453 | ATGAGTGTCACCGGGAAGAAAATGACCAAACAGTTAACAGGGAAGAGGGATGATACCCATTTGCATTCTGCAGCAAGATCAGGGAGTCTCTCTGTACTAAGGGAGACCCTTACTGGTATAGAAGATCAGGAGGAACTCCATGAGCTATTGGCAAGGCAGAACCAAGATGGTGAAACACCTCTTTATGTTGCTGCCGAATATGGTTATGTTGATCTAGTTAGGGAGTTGATTCAACTTTATGATCTTGCTGATGCTGGAATCAAAGCTAGGAACGGTTTTGATGCATTGCATATTGCTGCCAAACAAGGGGATTTAGATATAGTGAAGATCCTTATGGAAGCTCATCCTGAATTATCAATGACTGTGGATCAATCTAACACCACAGCATTGCACACGGCGGCGACACAAGGGCACGTTGAGATAGTGAAGCTCCTCTTGGAAGCAGGAAAAGGCTTGGCAACCATTGCCAAGAGCAATGGGAAAACAGCTTTGCATTCTGCTGCAAGGAATGGACATGTTGCGGTTGTGAAAGTGCTTCTTGAGCAGGACAGAGAGATTGCAACTCGAATCGATAAGAAGAGGCAGACGGCGCTTCATATGGCCGTGAAGGGACAGAATCTTGAGGTGGTGGAGGAGTTGATCAAAGGAGATCCATCAACTATAAACTTTGTTGACAATAAGGGAAACACACCATTGCATATAGCATCTAGAAAGGGCAGGGCTCAGATTGTAAAGAAGCTTCTTGAGCAGAAAGAAACAAACAAAAAAGTTGTTAACAGGTCTGGTGAGACTGCTTTAGACACTGCTGAAAAAATGGGGAACCACGATGTTAAGAATATTCTGTTAGAGCACGGCGTTGTGAACGCCAACGCCTTAGTAAAGTCCCATGGAATTACAGCCACAACCACAGCCACAGCCACGACCGCAACCACGTCTGCCAGGGAGCTAAAACAAACTGTGAGTGACATCAAACATGAGGTCCACAACCAGTTAGAGCACACCCGACAAACGCGAAAGCGGGTGCAAGGCATAGCAAAGAGAATCAACAAGATGCACCAAGAAGGCCTAAACAATGCAATAAACTCAACAACCGTGGTGGCAGTGCTAATTGCAACGGTGGCATTCGCGGCGATCTTCACAGTCCCCGGGCAGTTTGTTGATGATCCAAGCGATGTCCCTGAAGGGTCAACACTTGGTGAAGCAAACATAGCACCACAGGGTGCATTCTTGATCTTCTTTGTGTTTGATTCAATTGCACTTTTCATATCCCTTGCTGTGGTTGTGGTTCAAACTTCGGTGGTGGTTATAGAGAGCAAAGCAAAGAAGCAAATGATGGCTATAATAAACAAGCTAATGTGGTTGGCTTGTGTGCTTATAACTGTTTCATTCTTGGCATTGGCTTTTGTTGTTGTTGGGAAACAAGAGATGTGGCTTGCTATTTCGGTTACTGTTATTGGGACAACAATAATGGTTACAACCTTGGGGACTATGTGTTATTGGGTTATTAAGCACCGTATTCAGGCCTCTAATTTGAAGAACATAAGGAGATCTTCCATGGATACAAATAAGACTAAGTCTTCTTCAGTCACTGCTTACTCCGATTCTGAACTACTAAACAGAATGTATGCCATTTAG | 1635 | 0.4434 | MSVTGKKMTKQLTGKRDDTHLHSAARSGSLSVLRETLTGIEDQEELHELLARQNQDGETPLYVAAEYGYVDLVRELIQLYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDQSNTTALHTAATQGHVEIVKLLLEAGKGLATIAKSNGKTALHSAARNGHVAVVKVLLEQDREIATRIDKKRQTALHMAVKGQNLEVVEELIKGDPSTINFVDNKGNTPLHIASRKGRAQIVKKLLEQKETNKKVVNRSGETALDTAEKMGNHDVKNILLEHGVVNANALVKSHGITATTTATATTATTSARELKQTVSDIKHEVHNQLEHTRQTRKRVQGIAKRINKMHQEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPSDVPEGSTLGEANIAPQGAFLIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVSFLALAFVVVGKQEMWLAISVTVIGTTIMVTTLGTMCYWVIKHRIQASNLKNIRRSSMDTNKTKSSSVTAYSDSELLNRMYAI | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip08g00453 | 544 | Gene3D | - | 154 | 219 | IPR036770 | - | |
| Aip08g00453 | 544 | Gene3D | - | 5 | 153 | IPR036770 | - | |
| Aip08g00453 | 544 | Pfam | Ankyrin repeats (3 copies) | 84 | 149 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | Pfam | Ankyrin repeats (3 copies) | 198 | 286 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | Pfam | Ankyrin repeats (3 copies) | 8 | 79 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | Pfam | Ankyrin repeat | 159 | 181 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 159 | 188 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 193 | 223 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 227 | 257 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 125 | 154 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 91 | 120 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 261 | 291 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 16 | 45 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | SMART | ANK_2a | 56 | 85 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat region circular profile. | 159 | 186 | - | - | |
| Aip08g00453 | 544 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 4 | 540 | - | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat profile. | 159 | 191 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat region circular profile. | 56 | 78 | - | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat region circular profile. | 125 | 149 | - | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat profile. | 56 | 78 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat region circular profile. | 227 | 249 | - | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat region circular profile. | 91 | 113 | - | - | |
| Aip08g00453 | 544 | Gene3D | - | 220 | 311 | IPR036770 | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat profile. | 91 | 123 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | PANTHER | ANKYRIN REPEAT PLANT PROTEIN | 4 | 540 | - | - | |
| Aip08g00453 | 544 | SUPERFAMILY | Ankyrin repeat | 21 | 285 | IPR036770 | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat profile. | 125 | 157 | IPR002110 | GO:0005515 | |
| Aip08g00453 | 544 | Pfam | Domain of unknown function | 354 | 469 | IPR026961 | - | |
| Aip08g00453 | 544 | ProSiteProfiles | Ankyrin repeat profile. | 227 | 249 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip08g00453 | Aip-Chr8 | 3485215 | 3487637 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip08g00453 | 2 | 544 | Miscellaneous Gene Families | AT1G07710 | 68.739 | 0.0 | 700 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip08g00453 | - | - | gmx:100791519 | 785.408 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip08g00453 | 08 | 3485215 | 3487637 | Aip08g00453 | 08 | 3485215 | 3487637 | ECH | |
| Aip08g00453 | 08 | 3485215 | 3487637 | Aip03g00421 | 03 | 4133110 | 4136295 | ECH |