Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00423 ATGGGTCAAGGCCTCAGCTGCAGAGCAGGCAACCACGAGCATGGCCTCTTCACTGCCGTCCACCACGGTCACCTTCTCACCGTCACCTCCCTCTTAGACCACGACCCTTCTCTCCTCCACCACACCACTGTATACGATCGCCACTCTCCTCTTCATATTGCCGCTGCCAAAGGCCACATCCACATTCTTTCCAACCTTCTCGATCGATCTCTTAATCCTGATCTTCTCAATCGCCAGAAGCAGACCCCGCTCATGCTCGCAGCAATGCACGGCAAGATCGACTGTGTCCAGAAGCTTCTTCAAGCTGGAGCTAATGTTTTGATGTTCGATTCTATTTACGGAAGAACATGCTTGCATTATTCAGCTTATTACGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCTAGTCCTGTCGCTGCTTCTTGGGGATTTTCTCGGTTTGTAAATATCAGAGATGGCAAAGGTGCAACGCCATTACACTTGGCAGCTCGGCAAAGAAGGCCGGACTGCGTGCGTGTTCTGTTAGACAGTGGAGCTCTTGTTTGTGCTTCAACAGGTGGATATGGATGTCCAGGGAGCACTCCCCTACATGTTGCGGCCAGAGGTGGATCTCTGGATTGCATTCGCGAGCTCTTAGCTTGGGGCGCCGATCGTCTTCAGCGCGACGCATCCGGGAGAATACCGTATGTGGTAGCTATGAAGCACAAGCATGGGGCATGTGCATCACTGCTGAATCCCTCGTCTGCAGAGCCCCTTGTGTGGCCCTCTCCATTGAAGTTCATCAGCGAACTTAATCAAGAAGCCAAGGCCTTATTAGAGCAGGCCTTGAAGGATGCAAACAGAGAGAGGGAGAAAAATATATTATTGAAGCCAACCACCTACTCTCTCCCATCTCCATCTCATTCTGATGATGATAATATCTCTCAGGTTAGCGAGTCAGCATTATGCTGCATTTGCTTTGAGCAAGAATGCACAATTGAAGTCCAGAACTGTGGGCACCAGATGTGTGCACAATGCACATTAGCCCTATGTTGCCACAACAAACCAAACCCTGCCACGGCTGCCCTTACGCCGCCGGTTTGTCCCTTCTGTCGAAGCGCGATAGCCAGGCTGGTGGCCGTGAAGGTGGAAGCTCAGGAGGAAGTGGATCAAGACACCAATAATGGTTCCAAACTAAGCAAGTCATCAAGAAAAACAAGAAACACAAATGAGGGCGGCAGTAGCAGCTTCAAAGGCCTATCATTCGCCAAGTTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCTGATGATGAATGGATTCACAAAGACTGA 1323 0.5042 MGQGLSCRAGNHEHGLFTAVHHGHLLTVTSLLDHDPSLLHHTTVYDRHSPLHIAAAKGHIHILSNLLDRSLNPDLLNRQKQTPLMLAAMHGKIDCVQKLLQAGANVLMFDSIYGRTCLHYSAYYGHSSCLKAILSAAQSSPVAASWGFSRFVNIRDGKGATPLHLAARQRRPDCVRVLLDSGALVCASTGGYGCPGSTPLHVAARGGSLDCIRELLAWGADRLQRDASGRIPYVVAMKHKHGACASLLNPSSAEPLVWPSPLKFISELNQEAKALLEQALKDANREREKNILLKPTTYSLPSPSHSDDDNISQVSESALCCICFEQECTIEVQNCGHQMCAQCTLALCCHNKPNPATAALTPPVCPFCRSAIARLVAVKVEAQEEVDQDTNNGSKLSKSSRKTRNTNEGGSSSFKGLSFAKLGSRSSGRIAADDEWIHKD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00423 440 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Aip08g00423 440 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Aip08g00423 440 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Aip08g00423 440 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Aip08g00423 440 Gene3D - 10 145 IPR036770 -
Aip08g00423 440 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Aip08g00423 440 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Aip08g00423 440 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Aip08g00423 440 MobiDBLite consensus disorder prediction 389 420 - -
Aip08g00423 440 Coils Coil 262 289 - -
Aip08g00423 440 PANTHER HOMEOBOX PROTEIN WARIAI 1 439 - -
Aip08g00423 440 SMART ANK_2a 158 187 IPR002110 GO:0005515
Aip08g00423 440 SMART ANK_2a 11 40 IPR002110 GO:0005515
Aip08g00423 440 SMART ANK_2a 79 108 IPR002110 GO:0005515
Aip08g00423 440 SMART ANK_2a 113 143 IPR002110 GO:0005515
Aip08g00423 440 SMART ANK_2a 195 224 IPR002110 GO:0005515
Aip08g00423 440 SMART ANK_2a 46 75 IPR002110 GO:0005515
Aip08g00423 440 Pfam Ankyrin repeats (many copies) 196 233 IPR002110 GO:0005515
Aip08g00423 440 SUPERFAMILY RING/U-box 319 374 - -
Aip08g00423 440 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Aip08g00423 440 Gene3D - 146 198 IPR036770 -
Aip08g00423 440 Pfam Ankyrin repeats (3 copies) 113 184 IPR002110 GO:0005515
Aip08g00423 440 Pfam Ankyrin repeats (3 copies) 17 110 IPR002110 GO:0005515
Aip08g00423 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 390 IPR013083 -
Aip08g00423 440 Gene3D - 199 252 IPR036770 -
Aip08g00423 440 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Aip08g00423 440 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 439 - -
Aip08g00423 440 MobiDBLite consensus disorder prediction 384 440 - -
Aip08g00423 440 SUPERFAMILY Ankyrin repeat 12 251 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00423 Aip-Chr8 3235230 3237671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00423 13 285 Miscellaneous Gene Families AT2G31820 27.562 3.84e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00423 - - gmx:100786708 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00423 08 3235230 3237671 Aip08g00423 08 3235230 3237671 ECH
Aip08g00423 08 3235230 3237671 Aip03g00470 03 4578516 4581725 PCT