Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00470 ATGGGTCAGGGGATGAGTTGCAGAGCTAGTGGCAATGAACATGGTCTCTTCCGTGCAGTTCAGCATGGTGACATTGGAACCGTTTCTTCTCTGCTTCAAACACACCCTACTCTCATGCACCACACCACTGTCTATGACCGCCACTCTCCCCTTCACATTGCTGCTGCCAATGGCCACTTTCAGATTTTGTCTAGGCTTTTAGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACTCCACTTATGTTGGCAGCGATGCACGGCAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATGTGTTATTGTTTGATACTCATTATGGCAGAACATGCTTGCACTATGCTGCTTACTATGGTCATTCTTCTTGCCTCAAGGCAATTCTTTCTGCTGCTCAAACAAGTCCAGTGGCTGCATCTTGGGGGTTTGCACGGTTTGTGAATATTAGAGATGGTAGAGGTGCAACACCATTGCACTTAGCAGCACGTCAAAGACGAGCTGAATGTGTACATATTCTATTGAATAGTGGAGCTCTTGTTTGTGCTGCAACTGGAAGATATAGCTGTCCTGGTAGCACTCCTCTTCATCTGGCAGCTAGAGCAGGGTCCCTTGATTGTGTCCGGAAACTCTTGGCATGGGGTGCAGATCGTCTTCAGCGCGATGCATCTGGGCGAATACCTCATGTGGTTGCTCTGAAACACAAACATGGTGCATGTGCAGCATTGTTAAACCCTGCATCTGCAGAGCCTCTAGTTTGGCCATCACCCTTGAAGGTAATAAGTGAGCTTAATCCGGAGGCCAAAGCGCTATTAGAGCAGGCACTGATGGATGCAAACAGAGAAAGGGAGAAAAACATCTTGAAGGGAAGTGAGTACTCTCTTCCATCTCCTTCGGACTCTGATGGAGCAGATGATAATATCTCAGAGATGAGTGAGACAGAATTGTGCTGCATCTGCTTTGAGCAAGTTTGCACAATTGAAGTCCAAGATTGTTGCCACCAAATGTGTGCACAATGCACACTAGCACTCTGCTGCCACAATAAGCCGAACCCTGTCACGGCTTCCCTTACCGCGCCAGTTTGTCCCTTCTGCCGAAGCACCATAGCCAGGCTGGCAGTTATCAAGATAGATTGCTACGACGACTTTGATCCAGACAGTGTCGAAATCAGTTGTTCCAAGCACAGCAAGTCAAGGAAGTCCTGGAACTTCAATGAGTGCAGTAGCAGCAGCTTCAACAAGGGATTACCTGCTGCTGCAGTCGGTTCATTCGGAAAGGTGGGCAGCCGAAGCTCCGGAAGGGTTGTTGCTGAAAACGAGTGGGTTGATAACAAGCAACAGTGA 1356 0.483 MGQGMSCRASGNEHGLFRAVQHGDIGTVSSLLQTHPTLMHHTTVYDRHSPLHIAAANGHFQILSRLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLLFDTHYGRTCLHYAAYYGHSSCLKAILSAAQTSPVAASWGFARFVNIRDGRGATPLHLAARQRRAECVHILLNSGALVCAATGRYSCPGSTPLHLAARAGSLDCVRKLLAWGADRLQRDASGRIPHVVALKHKHGACAALLNPASAEPLVWPSPLKVISELNPEAKALLEQALMDANREREKNILKGSEYSLPSPSDSDGADDNISEMSETELCCICFEQVCTIEVQDCCHQMCAQCTLALCCHNKPNPVTASLTAPVCPFCRSTIARLAVIKIDCYDDFDPDSVEISCSKHSKSRKSWNFNECSSSSFNKGLPAAAVGSFGKVGSRSSGRVVAENEWVDNKQQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00470 451 SUPERFAMILY RING/U-box 315 375 - -
Aip03g00470 451 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Aip03g00470 451 Gene3D - 199 253 IPR036770 -
Aip03g00470 451 Gene3D - 146 198 IPR036770 -
Aip03g00470 451 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Aip03g00470 451 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Aip03g00470 451 Gene3D - 11 145 IPR036770 -
Aip03g00470 451 SUPERFAMILY Ankyrin repeat 16 253 IPR036770 -
Aip03g00470 451 SMART ANK_2a 158 187 IPR002110 GO:0005515
Aip03g00470 451 SMART ANK_2a 113 143 IPR002110 GO:0005515
Aip03g00470 451 SMART ANK_2a 79 108 IPR002110 GO:0005515
Aip03g00470 451 SMART ANK_2a 46 75 IPR002110 GO:0005515
Aip03g00470 451 SMART ANK_2a 195 224 IPR002110 GO:0005515
Aip03g00470 451 SMART ANK_2a 11 40 IPR002110 GO:0005515
Aip03g00470 451 Pfam Ankyrin repeats (3 copies) 16 109 IPR002110 GO:0005515
Aip03g00470 451 Pfam Ankyrin repeats (3 copies) 110 183 IPR002110 GO:0005515
Aip03g00470 451 PANTHER HOMEOBOX PROTEIN WARIAI 1 448 - -
Aip03g00470 451 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Aip03g00470 451 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Aip03g00470 451 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Aip03g00470 451 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Aip03g00470 451 Pfam Ankyrin repeats (many copies) 193 231 IPR002110 GO:0005515
Aip03g00470 451 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Aip03g00470 451 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Aip03g00470 451 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00470 Aip-Chr3 4578516 4581725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00470 33 251 Miscellaneous Gene Families AT5G02620 29.075 1.55e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00470 - - adu:107476851 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00470 03 4578516 4581725 Aip03g00470 03 4578516 4581725 ECH
Aip08g00423 08 3235230 3237671 Aip03g00470 03 4578516 4581725 PCT