LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00328	ATGTCGGTGATTTCATGCTTCTCTTTTGGCCGAACCAAAATCTTCAACTTTACGGCTTCAACAACTTCAAGATCCCTCTTTTCCTCAAAAACCAGCATACCTACCTCATCAACAGCCAAAAGAACTGTGCAACGTTCAGTTAAAATTGAACAACGCACGAAGTTTGGAATAACTGATATTGATGGATGTCCGTACAAAGGAGCAAATGAATTGGTTCAACGCAGTGAACCACCACCCCATTGGGAAAAGGTGCTTGAAGGGATTCGCAAAATGATGAGTTTTTCTAAAGATGGAACAGTTGACTCAATGGAATCTGAAGAAGCTGCTGATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTCTTGGCATCTACTGTTTTATCAAGCCAAACTAAGGGGCATGTTTCTCAAGGAGCAACTAAACGTCTTCGGCTAAATGGTCTGCTTACTGCTGATACAATCAACAAAGCTGATGAAGAAACCATCAGAAAGTTGATTTACCCTGTTGGATTTTATAAGAGAAAAGCCAGCAACTTGAAAAAGATTGCAGATATTTGTCTCATGAAATATGATGGAGACATACCTAATTCAGTTGAGGAACTGCTCTTACTTCCAGGTGTAGGTCCTAAGATAGCTTATTTGGTTATGATTCTTGGATGGAACAATGTTCAAGGGATATGCGTCGATACTCATGTCCACCGCATTTGCAATCGCCTTGGATGGGTTTCCAGAGCAGGCACAAAGCAGAAAACATCAACACCGGAAGAAACAAGAAAGGCGTTGCAGCGTTGGCTCCCAAGAGAAGAATGGGTTCCAATAAATCCCCTTATGGTAGATTTTGGTCGAACAATTTGCACTCCTTTACGACCTCATTGTGGAAAGTGTTGTATAAGTAGTCTGTGCCCATCAGCATTCACAGAGACTTCTAAGCCATCTTCCAAGTCCAATAAGTCCGAACTGAAAAAGAGGCTTTAA	975	0.4144	MSVISCFSFGRTKIFNFTASTTSRSLFSSKTSIPTSSTAKRTVQRSVKIEQRTKFGITDIDGCPYKGANELVQRSEPPPHWEKVLEGIRKMMSFSKDGTVDSMESEEAADTVPPKERRFAVLASTVLSSQTKGHVSQGATKRLRLNGLLTADTINKADEETIRKLIYPVGFYKRKASNLKKIADICLMKYDGDIPNSVEELLLLPGVGPKIAYLVMILGWNNVQGICVDTHVHRICNRLGWVSRAGTKQKTSTPEETRKALQRWLPREEWVPINPLMVDFGRTICTPLRPHCGKCCISSLCPSAFTETSKPSSKSNKSELKKRL	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00328	324	CDD	ENDO3c	119	281	IPR003265	GO:0006284
	Aip08g00328	324	Hamap	Endonuclease III-like protein 1 [NTHL1].	77	307	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Aip08g00328	324	SMART	ccc3	284	304	IPR003651	GO:0051539
	Aip08g00328	324	SMART	endo3end	127	283	IPR003265	GO:0006284
	Aip08g00328	324	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	57	318	-	-
	Aip08g00328	324	ProSitePatterns	Endonuclease III family signature.	192	221	IPR004036	-
	Aip08g00328	324	Gene3D	-	219	306	IPR023170	-
	Aip08g00328	324	Gene3D	Hypothetical protein; domain 2	107	218	-	-
	Aip08g00328	324	MobiDBLite	consensus disorder prediction	305	324	-	-
	Aip08g00328	324	Pfam	HhH-GPD superfamily base excision DNA repair protein	124	266	IPR003265	GO:0006284
	Aip08g00328	324	SUPERFAMILY	DNA-glycosylase	113	308	IPR011257	GO:0003824\|GO:0006281
	Aip08g00328	324	Pfam	Helix-hairpin-helix motif	189	216	IPR000445	GO:0003677
	Aip08g00328	324	PANTHER	ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC	57	318	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g00328	Aip-Chr8	2448278	2450508	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00328	K10773		-	qsu:111996257	392.504

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g00328	08	2448278	2450508	Aip08g00328	08	2448278	2450508	ECH
	Aip08g00328	08	2448278	2450508	Aip03g00619	03	6083230	6087419	PCT