Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00619 ATGTTGGTCTTTTCGATTACACCTCGATCCTTTGGTTTGGGGCGAATCAAAGTCTCGTTTTTGATGACTCAAACAACGCCATCTCTTCCCTCCAATTTCAACACCGACACACCCACCTCGGACTCCTCCTCTCACGCTGCTTCTGTGTCCAAAGCTCGTGTCTTTGTGAGGAGAAGCAAGAGGCCCAAAACCACTCTTGTGGCACTTCAACAAAAGGAGCTTCAGCCCCCAACACGTGATCATGACAAAAGTTCTGGCCTTCCTGAAATTGAAGATTTTACATACAGTGGAGCAAATAATGCATTTACTCAATCCAGTAAATCAGAATTGGGCTTGGACGCGACTCTTGTGGAAAGTGAAGCTACTTCACCTAGACACAGTGGTGAATTACCTGCACACTGGGAAAGGGTGCTTGAGGGGATTCGCAGAATGAGGTGTTCTGCAGAAGCACCGGTAGACACTATGGGATGTGAGAAAGCTGGCGATACTCTACCTCCTAAGGAAAGAAGATTTGCTGTCCTAGTTTCTTCTCTTTTGTCAAGCCAAACCAAAGATCATGTTACTCATGGAGCAATCCAACGTCTTCTTGAAAATGGCCTACTTACCCCTGACGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGATGCTTTACCCTGTTGGGTTCTATACAAGAAAAGCCACCAACTTGAAAAAAATCGCAAACATTTGTCTCATGAAGTATGACGGAGACATACCTAGCACAATTGAGCAATTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTTCAAGGAATATGTGTTGATACTCATGTCCACCGCATCTGCAATCGGCTTGGATGGGTGTCTAGACCCAGCACAAAACAGAAAACTCTAACACCTGAAGAAACAAGGGAGGCATTGCAAAGATGGCTTCCAAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACAAACCATTTGCACTCCCTTGAGACCTCGTTGTGGAGAATGTGGTATTAGTNNNNNNNNNNNNNNNNNNNNNNCCAAGCCCAAAAAGTCTGGGCCTAACAAGAAGCGTTAG 1110 0.4387 MLVFSITPRSFGLGRIKVSFLMTQTTPSLPSNFNTDTPTSDSSSHAASVSKARVFVRRSKRPKTTLVALQQKELQPPTRDHDKSSGLPEIEDFTYSGANNAFTQSSKSELGLDATLVESEATSPRHSGELPAHWERVLEGIRRMRCSAEAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLENGLLTPDAINNADEETIKKMLYPVGFYTRKATNLKKIANICLMKYDGDIPSTIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRPSTKQKTLTPEETREALQRWLPREEWVPINPLLVGFGQTICTPLRPRCGECGISXXXXXXXXKPKKSGPNKKR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00619 369 ProSitePatterns Endonuclease III family signature. 244 273 IPR004036 -
Aip03g00619 369 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 68 350 - -
Aip03g00619 369 Pfam Helix-hairpin-helix motif 241 269 IPR000445 GO:0003677
Aip03g00619 369 MobiDBLite consensus disorder prediction 70 90 - -
Aip03g00619 369 CDD ENDO3c 171 333 IPR003265 GO:0006284
Aip03g00619 369 SUPERFAMILY DNA-glycosylase 142 350 IPR011257 GO:0003824|GO:0006281
Aip03g00619 369 Pfam HhH-GPD superfamily base excision DNA repair protein 175 303 IPR003265 GO:0006284
Aip03g00619 369 MobiDBLite consensus disorder prediction 27 46 - -
Aip03g00619 369 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 68 350 - -
Aip03g00619 369 SMART endo3end 179 335 IPR003265 GO:0006284
Aip03g00619 369 Hamap Endonuclease III-like protein 1 [NTHL1]. 130 359 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Aip03g00619 369 Gene3D Hypothetical protein; domain 2 157 268 - -
Aip03g00619 369 Gene3D - 269 354 IPR023170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00619 Aip-Chr3 6083230 6087419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00619 K10773 - gmx:100818398 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00328 08 2448278 2450508 Aip03g00619 03 6083230 6087419 PCT