LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00292	ATGAATTTGCAACAAGCTGGGCAGCCTAAATCTTCTAATGGATATGGGCGTCGAAAATCTGAAAGAGAAGGGGCAACAAAGTCAGAGAATAAAATCCCATCTGGAAAATTAAATTCCGCCAGATTAGCAAGTACAGGTGCTGTGACTGGCTGTAAAGGTGGTGGCTATGAGAGTCCTTCACATGATCGTCTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTTCAGGTGAAAAATGGGTCAATGTACTCTGGAATATTTCATGCAACAAACGCTGACAATGATTTTGGAATTGTTTTGAAAATGGCTCGCTTAATTAAGGATGGTTCTTTAAAAGGGCAGAAGTCTAGTGCCGAACCTGTCAGCAAGGCTCCTTCTAAGATCTTAATTATACCTGCCAAAGAACTTGTACAAGTTATAGCAAAGGGTGTTGCCGTTACTAGGGATGGCCTACCTAGTGAATTGCACCATGATATGCATCAGGAAATCATGGTAGATTCGTTAATATCTCATTCTCGACATGTTGAGTTAGGGAGAGAATTGAAACCCTGGGTACCTGATGAAGATGTTCCACAATGCCCAGAACTGGAAAATACCTTTGATGGTCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCCTTGTTTGGTGTAAAAAGCACATTCAATGAGGAACTATATACAACAAAGCTTGAAAAGGGGCCTCGGACAAGAGAACTGGAAAAACAAGCCTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTGCATCTTGCGGAGGAAAGAGGACTTCACTTTCATGAAAACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCGCTAGGGGTAAAGGTGTTGATGATAGCGGATATGATGAAAATGAGGACATACTGTCTGATTCACTCAATTCTGAAACCTTTGGTGGTATACTTGGCTCAGTAGGTAAGGGACCTGGTGAAATAACTGGTGGAAAAGGGAATGATGGAGCACTAGCAAATTCGTCCTCTTTGGATCTTCCACAGTCATCTCAATCAAGCACTGGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCCAAGCAATTGGCATCGGAACTCCCTACTAAAATCTACTCATCTTCAGACGAGGAAAACAGGATTCAGGATCATTTGGCCAGTGATCTACATAGATCCAGTGGTAATAACAAGGAAGAAAATCAGAAACAATCTGAGGATGTTCAACTGTCAAAATCTGAAGCAATTTCAGGTGCAGATTTACATGCATCACTCCACTCAAAGAAAGATGGCTCTGATAAAGGGGTATTATCTTCTAATGTCACCTCTTATACCGCTTCATCTCATGTTCCATCAAAGACTCACGAAAAGACTGGCTCACCTGGGGATTTGACTCAGCGTTCACTTGCTGGAAAAATTAATGGGGAAGCAAAGTTTGTAAGTCCACGTGGGACATCATCTGCTTCAGATTCTGTGGGAGGTGTGGCAGCATCCTCTGGTCTTGGTTTGTCTCCAAGTTCATCTGTTGGTTCATTGTCTTCTGAAAAATCAACTCTTAATCCCAATGCCAAGGAATTCAAGCTCAATCCTAATGCAAAGAGTTTTGTTCCCTCTCAAACACCTGTTCGGCCTCCTACCCCCGTGTCCGATGGTTCCTTTTATTTTCCACCCAATGTATCTACTGTACCAAATATGCCAGGCATGCCCATGAGTATTGGAGTTGGACCTACTTTTACTGGGCCACAACACATGATATATAATCCGCAGGTAGCGCAAATGCCATCTCAACCATATTTTCATCCAAATGGCCCACAGTATGGTCAGCTTATTGGTCATCCTAGGCAGGTTTTATACATGCCGAGTTACCTACCTCCTGAAATGCCATACAAGGGACGAGATTATTGA	1929	0.4241	MNLQQAGQPKSSNGYGRRKSEREGATKSENKIPSGKLNSARLASTGAVTGCKGGGYESPSHDRLVYVTTCLIGHQVEVQVKNGSMYSGIFHATNADNDFGIVLKMARLIKDGSLKGQKSSAEPVSKAPSKILIIPAKELVQVIAKGVAVTRDGLPSELHHDMHQEIMVDSLISHSRHVELGRELKPWVPDEDVPQCPELENTFDGPWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPRTRELEKQALRIAREIEGEETQDLHLAEERGLHFHENFDIDEETRFSSVARGKGVDDSGYDENEDILSDSLNSETFGGILGSVGKGPGEITGGKGNDGALANSSSLDLPQSSQSSTGVDLSRSGSYDHAKQLASELPTKIYSSSDEENRIQDHLASDLHRSSGNNKEENQKQSEDVQLSKSEAISGADLHASLHSKKDGSDKGVLSSNVTSYTASSHVPSKTHEKTGSPGDLTQRSLAGKINGEAKFVSPRGTSSASDSVGGVAASSGLGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSQTPVRPPTPVSDGSFYFPPNVSTVPNMPGMPMSIGVGPTFTGPQHMIYNPQVAQMPSQPYFHPNGPQYGQLIGHPRQVLYMPSYLPPEMPYKGRDY	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00292	642	Coils	Coil	242	262	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	488	547	-	-
	Aip08g00292	642	SMART	LsmAD_2	221	292	IPR009604	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	396	418	-	-
	Aip08g00292	642	Gene3D	-	68	138	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	442	475	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	337	362	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	1	38	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	323	369	-	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	487	556	-	-
	Aip08g00292	642	Pfam	LsmAD domain	221	291	IPR009604	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	15	29	-	-
	Aip08g00292	642	Pfam	Ataxin-2 C-terminal region	523	534	IPR009818	-
	Aip08g00292	642	PANTHER	ATAXIN 2-RELATED	4	635	IPR045117	GO:0003723
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	433	475	-	-
	Aip08g00292	642	Pfam	Ataxin 2 SM domain	61	145	IPR025852	-
	Aip08g00292	642	MobiDBLite	consensus disorder prediction	396	415	-	-
	Aip08g00292	642	PANTHER	ATAXIN-2 HOMOLOG	4	635	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g00292	Aip-Chr8	2181228	2187724	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00292	-		-	gmx:100812754	942.569

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g00292	08	2181228	2187724	Aip08g00292	08	2181228	2187724	ECH
	Aip08g00292	08	2181228	2187724	Aip09g01161	09	17400604	17410081	PCT