Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00191 ATGATCTCCTCCAGCTCATGCTCCTTCCTGAGCAACTCAGCTGTAGCTGGGTCTCGCAGCTTCTCTGGTGGTGCGAGGAAGGGTCCTTCGAGTCCTTTCAGGGTGGTGTGTTTGGCTCCAAGCAATGACAGAAACGGAAGCGTTGTGTTAGATTCTCCCGCGAAGAAAGAGCAGATAAGGAATGAACCAACATCGCCGCCTGCTGAAGAGGAAACAGTCTCTTCCGGTGGCCCTCAGGATGTCTACGGCGAGGATAAGGCCACGGAGGATCAGTTTGTTACCCCTTGGAATGTCTCTGTTGCTAGCGGTTATACATTGTTGCGAGATCCCCACTTCAATAAAGGGTTGGCCTTCACTGAGAAGGAGAGGGATGCTCACTACTTGCGAGGTCTTCTTCCCCCGACAGTTATTCCGCAGGAAACTCAGGTGAAGAAAATGATCCAGCACGTTCGTCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGGAATGAACGGTTGTTTTATAAGCTTCTTATTGAGCACGTCGAAGAGTTACTCCCAGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATACGGAAGCATCTTCATGCGTCCTCAGGGTCTTTATATCAGCTTGAAAGAGAAGGGGAGGATTCTTGAAGTCCTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAACGGATCTTGGGTCTTGGGGATCTTGGTTGTCAGGGAATGGGAATACCAGTTGGAAAACTTTCTTTATATACCGCACTCGGAGGAGTTCGTCCGTCTGCTTGTTTGCCTATCACCATTGATGTGGGAACAAACAATGAGAACCTGTTGAATGATGAGTTATATATAGGGCTCAAGCAAAGACGGGCGACTGGGCAGGAATATGCTGAACTTATGCATGAATTTATGAGTGCTGTCAAGCAAAATTACGGGGAGAAAGTCCTCATTCAGTTTGAAGACTTTGCAAACCACAACGCATTTGATCTACTTGAAAAATATAGATCAACCCATCTTGTTTTCAATGATGATATTCAAGGTACAGCATCAGTGGTCCTTGCTGGACTAGTTGCAGCTCTGAAATTGGTTGGGGGCAACTTGGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATTGCAGAACTTATTGCACTTGAAACATCAAAACAGACTAATGCCCCACTAGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGATTGATTGTAAGTTCCCGAAAAGAATCGCTTCAACATTTTAAGAAGCCATGGGCCCATGATCACGAACCTGTTCATCGACTCGTAGACGCTGTTAATAAAATCAAACCAACAGTGTTGATTGGAACCTCTGGACAAGGAAGAACTTTCACTAAAGAAGTTATTGAGGCAATGGCTTCAATCAATGAGAAACCTATCATTCTTTCACTTTCCAACCCAACTTCACAATCAGAATGTACTGCTGAAGAGGCTTACAAGTGGAGCCAGGGTCGCGCCATTTTCGCTAGCGGAAGCCCATTCCCTCCGGTTGAGTATGAAGGAAAAGTTTTTGTGCCTGGCCAGGCCAATAATGCATACATATTCCCCGGATTCGGTCTCGGTTTAATAATGTCCGGTACCATTCGCGTCCACGACGACCTCCTTCTCGCTGCATCGGAGGCTTTGGCTGCACAAGTGAGTGAAGAGAACTTTGAGAAAGGACTGATATACCCTCCATTCACCAACATCAGAAAGATTTCAGCACACATTGCTGCCAGTGTTGCTGCTAAGGCTTATGAGCTTGGGTTGGCCACTCGCCTTCCACAACCCAAGGATTTGGTTAAGGTTGGCCGTTGGCCACTCGCCTTCCACAACCCAAGGATTTGGTTAAGTTTGCTGAGAGCTACAACAGGAATGAATGAGCATCCAATGGTTGTGATGAATAAAGGAGGCTTTCTTGGAAATACTGGCAAGAATTAA 2016 0.4628 MISSSSCSFLSNSAVAGSRSFSGGARKGPSSPFRVVCLAPSNDRNGSVVLDSPAKKEQIRNEPTSPPAEEETVSSGGPQDVYGEDKATEDQFVTPWNVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIEHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNENLLNDELYIGLKQRRATGQEYAELMHEFMSAVKQNYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHDHEPVHRLVDAVNKIKPTVLIGTSGQGRTFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSEENFEKGLIYPPFTNIRKISAHIAASVAAKAYELGLATRLPQPKDLVKVGRWPLAFHNPRIWLSLLRATTGMNEHPMVVMNKGGFLGNTGKN 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00191 671 ProSitePatterns Malic enzymes signature. 354 370 IPR015884 GO:0004471
Aip08g00191 671 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 72 628 - -
Aip08g00191 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 358 641 IPR036291 -
Aip08g00191 671 CDD NAD_bind_1_malic_enz 358 627 - -
Aip08g00191 671 PRINTS Malic enzyme signature 354 370 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 385 401 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 269 291 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 173 197 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 329 347 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 488 504 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 PRINTS Malic enzyme signature 233 262 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 83 357 IPR046346 -
Aip08g00191 671 SMART Malic_M_2 358 611 IPR012302 GO:0051287
Aip08g00191 671 Gene3D - 101 355 IPR037062 GO:0004471
Aip08g00191 671 PANTHER MALIC ENZYME-RELATED 72 628 - -
Aip08g00191 671 Pfam Malic enzyme, NAD binding domain 358 610 IPR012302 GO:0051287
Aip08g00191 671 MobiDBLite consensus disorder prediction 1 19 - -
Aip08g00191 671 MobiDBLite consensus disorder prediction 1 83 - -
Aip08g00191 671 SMART malic_2 167 348 IPR012301 GO:0004471
Aip08g00191 671 Gene3D - 356 639 - -
Aip08g00191 671 PIRSF ME 65 633 IPR001891 GO:0004470|GO:0004471
Aip08g00191 671 Pfam Malic enzyme, N-terminal domain 167 348 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00191 Aip-Chr8 1309896 1317655 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00191 K00029 - gmx:100791514 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00458 09 4799748 4807350 Aip08g00191 08 1309896 1317655 ECH
Aip05g03292 05 138508999 138513962 Aip08g00191 08 1309896 1317655 ECH
Aip08g00191 08 1309896 1317655 Aip08g00191 08 1309896 1317655 ECH
Aip08g00191 08 1309896 1317655 Aip09g00458 09 4799748 4807350 PCT