Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00092 ATGGGGGCGGTGGTGCAGCGGTTGTGGTTGCTCCGTTCGCATAGAGCTCCCATATCACTACTACGGAGCTCAGATACGACGTCATTGGCGAGATGTTTCAGCTCCAAAGCAGGGCCAGGGTGGTTTCGCGGGCTCGAAGGGAACAAAAAGTCGAAACTGCCCTCCATAGTGAAAGCTGGAGAACCGGTTCTGCACGAGCGTGCCATGGAAGTGAATGTGAAGGAGATAAAGTCAGAAAGAGTGCAGAGTATTATCGATGACATGATCAAGGTCATGAGGAAAGCCCCTGGTGTTGGCCTCGCTGCTCCTCAGATTGGAATCCCCTTTAGGATAATTGTTTTGGAAGATAAAGAAGAATATATTGGTCTTGACACTAAGGAAGAGGCTGAAGCTCAAGATAGAAGACCTTTTGATCTCTTGGTTATCTTGAATCCTAAGCTAAAGAACAAGACCAACAGGACAGCCCTTTTCTTTGAAGGCTGCTTGAGTGTTAATGGATTTCTAGGTGTTGTGGAGCGTTACCTCGATGTTGAGGTTTCCGGTTATGATCGTCATGGTGAGCCCATCAAAATAAATGCTACAGGTTGGCAGGCTCGGATTTTACAGCACGAGTGCGATCATCTGGATGGAACTCTCTATGTTGATAAGATGCTACCTAAAACTTTCAGAACTGCCGAAAACCTGGACTTGCCTCTTGCCTGTGCCTGCCCCAAACTTGGTTCCCGCTAA 729 0.4774 MGAVVQRLWLLRSHRAPISLLRSSDTTSLARCFSSKAGPGWFRGLEGNKKSKLPSIVKAGEPVLHERAMEVNVKEIKSERVQSIIDDMIKVMRKAPGVGLAAPQIGIPFRIIVLEDKEEYIGLDTKEEAEAQDRRPFDLLVILNPKLKNKTNRTALFFEGCLSVNGFLGVVERYLDVEVSGYDRHGEPIKINATGWQARILQHECDHLDGTLYVDKMLPKTFRTAENLDLPLACACPKLGSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00092 242 Gene3D Peptide deformylase 52 241 IPR036821 -
Aip08g00092 242 TIGRFAM pept_deformyl: peptide deformylase 56 220 IPR023635 GO:0042586
Aip08g00092 242 PANTHER PEPTIDE DEFORMYLASE 29 242 IPR023635 GO:0042586
Aip08g00092 242 CDD Pep_deformylase 56 213 IPR023635 GO:0042586
Aip08g00092 242 Hamap Peptide deformylase [def]. 52 228 IPR023635 GO:0042586
Aip08g00092 242 PRINTS Peptide deformylase signature 86 115 IPR023635 GO:0042586
Aip08g00092 242 PRINTS Peptide deformylase signature 159 170 IPR023635 GO:0042586
Aip08g00092 242 PRINTS Peptide deformylase signature 171 189 IPR023635 GO:0042586
Aip08g00092 242 PRINTS Peptide deformylase signature 190 219 IPR023635 GO:0042586
Aip08g00092 242 Pfam Polypeptide deformylase 55 219 IPR023635 GO:0042586
Aip08g00092 242 SUPERFAMILY Peptide deformylase 53 224 IPR036821 -
Aip08g00092 242 PANTHER PEPTIDE DEFORMYLASE 29 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00092 Aip-Chr8 536723 538023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00092 K01462 - pvy:116144913 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00092 08 536723 538023 Aip08g00092 08 536723 538023 ECH
Aip08g00092 08 536723 538023 Aip09g00250 09 2268719 2271788 PCT