Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03610 ATGAATCCGCCCACGATAGACTTCAAGGTGGATCTCAATTCAGAGAGGGTTGAAGAAGAGAAAATGGAAGGGGGTTCTATGCTTTATTGTGATCTTTGTGATACAGAAGTAGTTTACAAGTTGGCGCAAATGTTGCTTCCAGGGCTAGCAACTTCCTGTGTTGATAGCACAGCTGGGAGCTTCAAGACTCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAATCTATATTACGCAGAGAAGCGAAACGTTTGTCGCTGAGTCTATTGTCTTGGATGGTGGTCCTAATGGTGAAGAATCGGATCATCCTTTTGATATCATTTCTAACTTCGTTGATGACTTTGCTATTTCAAAGAGGAATTTATTTACCCGGGTTTCTGGATTGCTACTCACTGATATGAGAGAAGACAAGATTGATGACTTCATGCAGGAGATGGAACTGACTGGTTTTTGGCCACTGGAAAGAAGAGAAACGATTGCAGAGGCGATTCTAAAGAATGTTGACATCAAGAATGAATTTCATTGCGCCATGAAGTTCAGATCTGTAGATGATCTCGCTGTTCATGCTTACCATTGTAACTTCAGACCTCTATTCTGTGAAAACGAGGGATGCAATGCAAGGTTAATTGCAAAACATTTGGAAAAGCATGACTCAATTTGTCCTTTCAAGATAATTCCATGTGAGCAGAAGTGTTCAGATAGCATTATGAGGCGTGCAATGGACAGACACTGTATCACTGTTTGTCCGATGAAGCTTGTAGATTGTCCATTTCATTCGTTAGGTTGTCGATCTGCTATAGCACAATGTGTGATCGAAAAGCACTGCGCAGATGATGTTCGTTCTCACTTGTGGCACTTGCTTAAAGGCATGTACAAGCAAGCATCTGGGGAAGATCTTCAAAGACGGGTACAGCAAATTATACAGGCATCACCAGGCAGCAGGTTAGCAGAGGCCCGGGATGTGAGATCTCTAAACTTTGTTGTCAAGGATATTGAAGCTAAGCTAGGGCCGTTTGAGTTGGGTTCTGTGAAGAAAAATAGCACAGAGACTCTCGCCAAAAACAACGGTGGGAAAAATGTTGCCACCAATGCAATCTATTag 1107 0.4228 MNPPTIDFKVDLNSERVEEEKMEGGSMLYCDLCDTEVVYKLAQMLLPGLATSCVDSTAGSFKTPGSVAVDLRKEMIIYITQRSETFVAESIVLDGGPNGEESDHPFDIISNFVDDFAISKRNLFTRVSGLLLTDMREDKIDDFMQEMELTGFWPLERRETIAEAILKNVDIKNEFHCAMKFRSVDDLAVHAYHCNFRPLFCENEGCNARLIAKHLEKHDSICPFKIIPCEQKCSDSIMRRAMDRHCITVCPMKLVDCPFHSLGCRSAIAQCVIEKHCADDVRSHLWHLLKGMYKQASGEDLQRRVQQIIQASPGSRLAEARDVRSLNFVVKDIEAKLGPFELGSVKKNSTETLAKNNGGKNVATNAIY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03610 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 282 IPR013083 -
Aip06g03610 368 Pfam TRAF-type zinc finger 218 276 IPR001293 GO:0008270
Aip06g03610 368 ProSiteProfiles Zinc finger TRAF-type profile. 218 265 IPR001293 GO:0008270
Aip06g03610 368 SUPERFAMILY TRAF domain-like 183 230 - -
Aip06g03610 368 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 348 IPR043211 -
Aip06g03610 368 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03610 Aip-Chr6 133489271 133490465 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03610 - - ahf:112695902 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03610 06 133489271 133490465 Aip02g02978 02 106390245 106393193 PCT